Co-expression analysis

Gene ID HV02A24u_at
Gene name
Homology with ArabidopsisSimilar to At3g62840: - (HF=3e+0)
Module size 11 genes
NF 0.15
%ile 18.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9599.20.83HV02A24u_atHV02A24u--3e+0At3g62840-O.I.H.G.S.X.
0.3240.30.93Contig3185_s_atContig3185--1e+0At3g24820BSD domain-containing proteinO.I.H.G.S.X.
0.2427.20.91Contig5748_atContig5748--6e-2At4g32330-O.I.H.G.S.X.
0.2122.60.94Contig3186_atContig3186--5e+0At5g48657defense protein-relatedO.I.H.G.S.X.
0.1919.60.92Contig11003_atContig11003--1e+0At4g36410UBC17 (UBIQUITIN-CONJUGATING ENZYME 17)O.I.H.G.S.X.
0.1514.10.94Contig14831_atContig14831--7e+0At5g22545unknown proteinO.I.H.G.S.X.
0.1311.60.93Contig6271_atContig6271--4e-4At3g52120SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / D111/G-patch domain-containing proteinO.I.H.G.S.X.
0.1210.40.93Contig4757_atContig4757--9e-11At5g53620unknown proteinO.I.H.G.S.X.
0.108.40.95Contig4827_s_atContig4827--1e+0At1g48095unknown proteinO.I.H.G.S.X.
0.108.40.92Contig23093_atContig23093--5e-25At1g09840ATSK41 (SHAGGY-LIKE PROTEIN KINASE 41)O.I.H.G.S.X.
0.043.40.89Contig572_atContig572--1e-1At5g15265unknown proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
12.799.4GSM261046after 3 days in mannitol medium rep2GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
6.498.1GSM261045after 3 days in mannitol medium rep1GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
6.298.0GSM261047after 3 days in mannitol medium rep3GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
5.197.3GSM238419Endosperm 25DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.897.0GSM238418Endosperm 25DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.394.6GSM238417Endosperm 16DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.394.6GSM261073Albina f-17 Hardened rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
2.993.4GSM238416Endosperm 16DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
2.993.4GSM238412Endosperm 4DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
2.792.7GSM261055Bonus Hardened rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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