Co-expression analysis

Gene ID	HV02A24u_at
Gene name
Homology with Arabidopsis	Similar to At3g62840: - (HF=3e+0)
Module size	11 genes
NF	0.15
%ile	18.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.95	99.2	0.83	HV02A24u_at	HV02A24u	-	-	3e+0	At3g62840	-	O.I.	H.G.	S.X.	Please select
0.32	40.3	0.93	Contig3185_s_at	Contig3185	-	-	1e+0	At3g24820	BSD domain-containing protein	O.I.	H.G.	S.X.	Please select
0.24	27.2	0.91	Contig5748_at	Contig5748	-	-	6e-2	At4g32330	-	O.I.	H.G.	S.X.	Please select
0.21	22.6	0.94	Contig3186_at	Contig3186	-	-	5e+0	At5g48657	defense protein-related	O.I.	H.G.	S.X.	Please select
0.19	19.6	0.92	Contig11003_at	Contig11003	-	-	1e+0	At4g36410	UBC17 (UBIQUITIN-CONJUGATING ENZYME 17)	O.I.	H.G.	S.X.	Please select
0.15	14.1	0.94	Contig14831_at	Contig14831	-	-	7e+0	At5g22545	unknown protein	O.I.	H.G.	S.X.	Please select
0.13	11.6	0.93	Contig6271_at	Contig6271	-	-	4e-4	At3g52120	SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / D111/G-patch domain-containing protein	O.I.	H.G.	S.X.	Please select
0.12	10.4	0.93	Contig4757_at	Contig4757	-	-	9e-11	At5g53620	unknown protein	O.I.	H.G.	S.X.	Please select
0.10	8.4	0.95	Contig4827_s_at	Contig4827	-	-	1e+0	At1g48095	unknown protein	O.I.	H.G.	S.X.	Please select
0.10	8.4	0.92	Contig23093_at	Contig23093	-	-	5e-25	At1g09840	ATSK41 (SHAGGY-LIKE PROTEIN KINASE 41)	O.I.	H.G.	S.X.	Please select
0.04	3.4	0.89	Contig572_at	Contig572	-	-	1e-1	At5g15265	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
12.7	99.4	GSM261046	after 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
6.4	98.1	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
6.2	98.0	GSM261047	after 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
5.1	97.3	GSM238419	Endosperm 25DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
4.8	97.0	GSM238418	Endosperm 25DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.3	94.6	GSM238417	Endosperm 16DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.3	94.6	GSM261073	Albina f-17 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
2.9	93.4	GSM238416	Endosperm 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
2.9	93.4	GSM238412	Endosperm 4DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
2.7	92.7	GSM261055	Bonus Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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