Co-expression analysis

Gene ID	HU14M07u_s_at
Gene name
Homology with Arabidopsis	Similar to At5g65050: AGL31 (AGAMOUS LIKE MADS-BOX PROTEIN 31) (HF=1e+0)
Module size	6 genes
NF	0.92
%ile	99.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.1	0.97	HU14M07u_s_at	HU14M07u	-	-	1e+0	At5g65050	AGL31 (AGAMOUS LIKE MADS-BOX PROTEIN 31)	O.I.	H.G.	S.X.	Please select
0.83	94.0	0.96	Contig828_s_at	Contig828	-	-	1e-26	At2g34430	LHB1B1	O.I.	H.G.	S.X.	Please select
0.83	94.0	0.96	Contig5185_at	Contig5185	-	-	2e+0	At2g41480	electron carrier/ heme binding / peroxidase	O.I.	H.G.	S.X.	Please select
0.83	94.0	0.96	Contig14821_at	Contig14821	-	-	4e-2	At2g27130	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	O.I.	H.G.	S.X.	Please select
0.80	92.5	0.97	Contig9378_at	Contig9378	-	-	6e-10	At3g16100	ATRABG3C (ARABIDOPSIS RAB GTPASE HOMOLOG G3C)	O.I.	H.G.	S.X.	Please select
0.80	92.5	0.97	Contig15036_at	Contig15036	-	-	1e-1	At3g07090	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
8.2	98.7	GSM440978	Stressed seed_Rep1	GSE17669	Gene expression in the barley spike during drought stress
7.0	98.4	GSM419982	Seed_Rep2	GSE16754	Comparative transcriptional profiling of organs of the barley spike
7.0	98.4	GSM440976	Control seed_Rep2	GSE17669	Gene expression in the barley spike during drought stress
7.0	98.4	GSM440980	Stressed seed_Rep3	GSE17669	Gene expression in the barley spike during drought stress
6.7	98.3	GSM261070	Albina f-17 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
6.6	98.2	GSM440979	Stressed seed_Rep2	GSE17669	Gene expression in the barley spike during drought stress
6.6	98.2	GSM238417	Endosperm 16DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
6.2	98.0	GSM238419	Endosperm 25DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
5.8	97.8	GSM215731	gibberellin treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
5.7	97.7	GSM261069	Albina f-17 Control rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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