Co-expression analysis

Gene ID HU13P05r_at
Gene name
Homology with ArabidopsisSimilar to At3g61880: CYP78A9 (CYTOCHROME P450 78A9) (HF=1e+0)
Module size 6 genes
NF 0.14
%ile 17.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.4863.20.88HU13P05r_atHU13P05r--1e+0At3g61880CYP78A9 (CYTOCHROME P450 78A9)O.I.H.G.S.X.
0.5066.90.87Contig23473_atContig23473--1e+0At3g03890FMN bindingO.I.H.G.S.X.
0.4053.10.86Contig9006_atContig9006--6e-5At1g09850XBCP3 (xylem bark cysteine peptidase 3)O.I.H.G.S.X.
0.3342.60.89HVSMEb0014K09r2_s_atHVSMEb0014K09r2--2e+0At4g21215unknown proteinO.I.H.G.S.X.
0.075.80.88Contig16179_s_atContig16179--5e+0At4g31700RPS6 (RIBOSOMAL PROTEIN S6)O.I.H.G.S.X.
0.054.10.88HVSMEm0003G18r2_atHVSMEm0003G18r2--9e-1At1g09665Toll-Interleukin-Resistance (TIR) domain-containing proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
10.299.1GSM382234Root_Hg3GSE15295Mercury toxicity in barley rootsLink to GEO
7.198.4GSM382233Root_Hg2GSE15295Mercury toxicity in barley rootsLink to GEO
3.394.6GSM71148OWB-R unstress replicate 1GSE3170 Barley single feature polymorphisms and drought stress gene expressionLink to GEO
3.093.8GSM419973Lemma_Rep2GSE16754Comparative transcriptional profiling of organs of the barley spikeLink to GEO
3.093.8GSM440958Control lemma_Rep2GSE17669Gene expression in the barley spike during drought stressLink to GEO
2.993.4GSM238433Embryo 0 h; Seed germination; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
2.993.4GSM160815drought control rep3GSE6990Barley drought stressLink to GEO
2.893.1GSM419983Seed_Rep3GSE16754Comparative transcriptional profiling of organs of the barley spikeLink to GEO
2.893.1GSM440977Control seed_Rep3GSE17669Gene expression in the barley spike during drought stressLink to GEO
2.792.7GSM431546pathogen isolates: Mock - rep1GSE17238Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminisLink to GEO

Inter-species module comparison

A co-expression module including the poplar gene, Ptp.5940.1.S1_at, orthologous to the query gene, HU13P05r_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.6388.1Ptp.5940.1.S1_atAt3g61880p-coumaroyl shikimate 3'- hydroxylase /// p-coumaroyl shikimate 3'- hydroxylase /// p-coumaroyl shikimate 3'- hydroxylase-9e-21At2g40890CYP98A3 (cytochrome P450, family 98, subfamily A, polypeptide 3)O.I.H.G.S.X.
0.5582.2PtpAffx.225544.1.S1_x_atAt3g61880p-coumaroyl shikimate 3'- hydroxylase-3e-22At2g40890CYP98A3 (cytochrome P450, family 98, subfamily A, polypeptide 3)O.I.H.G.S.X.
0.2747.1PtpAffx.225544.1.S1_s_atAt3g61880p-coumaroyl shikimate 3'- hydroxylase /// p-coumaroyl shikimate 3'- hydroxylase /// p-coumaroyl shikimate 3'- hydroxylase-3e-22At2g40890CYP98A3 (cytochrome P450, family 98, subfamily A, polypeptide 3)O.I.H.G.S.X.
0.1525.3Ptp.4381.2.A1_a_atAt3g61880cytochrome P450-1e-4At3g48320CYP71A21O.I.H.G.S.X.
0.1016.3Ptp.6891.1.S1_atAt3g618802-dehydro-3-deoxyphosphoheptonate aldolase/ 3-deoxy-d-arabino-heptulosonate 7-phosphate synthetase-2e-65At4g39980DHS1 (3-DEOXY-D-ARABINO-HEPTULOSONATE 7-PHOSPHATE SYNTHASE 1)O.I.H.G.S.X.
0.1016.3Ptp.1088.1.S1_s_atAt3g61880hypothetical protein-1e+0At3g21640TWD1 (TWISTED DWARF 1)O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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