Co-expression analysis

Gene ID HU13P05r_at
Gene name
Homology with ArabidopsisSimilar to At3g61880: CYP78A9 (CYTOCHROME P450 78A9) (HF=1e+0)
Module size 6 genes
NF 0.14
%ile 17.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.4863.20.88HU13P05r_atHU13P05r--1e+0At3g61880CYP78A9 (CYTOCHROME P450 78A9)O.I.H.G.S.X.
0.5066.90.87Contig23473_atContig23473--1e+0At3g03890FMN bindingO.I.H.G.S.X.
0.4053.10.86Contig9006_atContig9006--6e-5At1g09850XBCP3 (xylem bark cysteine peptidase 3)O.I.H.G.S.X.
0.3342.60.89HVSMEb0014K09r2_s_atHVSMEb0014K09r2--2e+0At4g21215unknown proteinO.I.H.G.S.X.
0.075.80.88Contig16179_s_atContig16179--5e+0At4g31700RPS6 (RIBOSOMAL PROTEIN S6)O.I.H.G.S.X.
0.054.10.88HVSMEm0003G18r2_atHVSMEm0003G18r2--9e-1At1g09665Toll-Interleukin-Resistance (TIR) domain-containing proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
10.299.1GSM382234Root_Hg3GSE15295Mercury toxicity in barley rootsLink to GEO
7.198.4GSM382233Root_Hg2GSE15295Mercury toxicity in barley rootsLink to GEO
3.394.6GSM71148OWB-R unstress replicate 1GSE3170 Barley single feature polymorphisms and drought stress gene expressionLink to GEO
3.093.8GSM419973Lemma_Rep2GSE16754Comparative transcriptional profiling of organs of the barley spikeLink to GEO
3.093.8GSM440958Control lemma_Rep2GSE17669Gene expression in the barley spike during drought stressLink to GEO
2.993.4GSM238433Embryo 0 h; Seed germination; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
2.993.4GSM160815drought control rep3GSE6990Barley drought stressLink to GEO
2.893.1GSM419983Seed_Rep3GSE16754Comparative transcriptional profiling of organs of the barley spikeLink to GEO
2.893.1GSM440977Control seed_Rep3GSE17669Gene expression in the barley spike during drought stressLink to GEO
2.792.7GSM431546pathogen isolates: Mock - rep1GSE17238Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminisLink to GEO

Inter-species module comparison

A co-expression module including the soybean gene, Gma.7418.1.S1_at, orthologous to the query gene, HU13P05r_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.5273.1Gma.7418.1.S1_atAt3g61880--2e-6At1g74110CYP78A10O.I.H.G.S.X.
0.8592.8Gma.12064.1.S1_atAt3g61880--1e-10At5g25900GA3 (GA REQUIRING 3)O.I.H.G.S.X.
0.6986.8GmaAffx.64124.1.S1_atAt3g61880granule bound starch synthase Ia-1e-7At1g32900starch synthase, putativeO.I.H.G.S.X.
0.6483.4GmaAffx.25251.1.S1_atAt3g61880--4e+0At5g01870lipid transfer protein, putativeO.I.H.G.S.X.
0.6483.4Gma.959.1.S1_atAt3g61880--2e+0At3g06035unknown proteinO.I.H.G.S.X.
0.6181.8Gma.436.1.S1_atAt3g61880hypothetical LOC547938-3e-1At3g50550unknown proteinO.I.H.G.S.X.
0.6080.7GmaAffx.295.1.A1_s_atAt3g61880lipoxygenase-3-3e-1At4g34790auxin-responsive family proteinO.I.H.G.S.X.
0.5979.5Gma.13755.1.A1_atAt3g61880--3e-3At3g29260short-chain dehydrogenase/reductase (SDR) family proteinO.I.H.G.S.X.
0.5878.8Gma.17364.1.S1_atAt3g6188024 kDa oleosin isoform-6e-1At5g64850unknown proteinO.I.H.G.S.X.
0.5678.2GmaAffx.79733.1.S1_s_atAt3g61880Kunitz trypsin inhibitor /// trypsin inhibitor subtype A /// trypsin inhibitor subtype B-1e+1At5g58070TIL (TEMPERATURE-INDUCED LIPOCALIN)O.I.H.G.S.X.
0.5678.2Gma.226.1.S1_s_atAt3g6188024 kDa oleosin isoform-4e-1At5g64850unknown proteinO.I.H.G.S.X.
0.5273.1GmaAffx.3734.1.S1_atAt3g61880--5e-17At5g05410DREB2AO.I.H.G.S.X.
0.4158.1GmaAffx.81233.1.A1_atAt3g61880--3e+0At5g58650PSY1 (plant peptide containing sulfated tyrosine 1)O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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