Co-expression analysis

Gene ID HU11H18u_s_at
Gene name
Homology with ArabidopsisSimilar to At1g51400: photosystem II 5 kD protein (HF=7e-1)
Module size 24 genes
NF 0.20
%ile 25.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9699.40.92HU11H18u_s_atHU11H18u--7e-1At1g51400photosystem II 5 kD proteinO.I.H.G.S.X.
0.3037.00.93Contig23381_atContig23381--2e+0At3g05327-O.I.H.G.S.X.
0.3037.00.93HB26H03r_s_atHB26H03r--3e+0At5g62470MYB96 (myb domain protein 96)O.I.H.G.S.X.
0.3037.00.96Contig6422_atContig6422--3e-1At2g34900IMB1 (IMBIBITION-INDUCIBLE 1)O.I.H.G.S.X.
0.2528.90.93Contig4807_atContig4807--8e-11At5g04750F1F0-ATPase inhibitor protein, putativeO.I.H.G.S.X.
0.2326.10.96Contig7830_s_atContig7830--3e-22At2g02860SUT2 (SUCROSE TRANSPORTER 2)O.I.H.G.S.X.
0.2326.10.96Contig23565_atContig23565--2e+0At4g14819unknown proteinO.I.H.G.S.X.
0.2224.20.95Contig4091_atContig4091--3e-13At1g47128RD21 (responsive to dehydration 21)O.I.H.G.S.X.
0.2122.60.94Contig21617_atContig21617--3e-1At4g31470pathogenesis-related protein, putativeO.I.H.G.S.X.
0.2021.10.94Contig5368_atContig5368--2e+0At3g46150unknown proteinO.I.H.G.S.X.
0.2021.10.96HK06B02r_s_atHK06B02r--1e-5At3g43810CAM7 (CALMODULIN 7)O.I.H.G.S.X.
0.1818.20.94HM02P13u_s_atHM02P13u--6e+0At5g47980transferase family proteinO.I.H.G.S.X.
0.1716.90.96Contig11845_atContig11845--2e+0At2g35850unknown proteinO.I.H.G.S.X.
0.1615.30.95Contig9642_atContig9642--1e-13At4g27960UBC9 (UBIQUITIN CONJUGATING ENZYME 9)O.I.H.G.S.X.
0.1514.10.96Contig5444_s_atContig5444--1e+0At5g51210OLEO3 (OLEOSIN3)O.I.H.G.S.X.
0.1514.10.94Contig2216_s_atContig2216--1e-19At5g64400-O.I.H.G.S.X.
0.1514.10.94HT07O19u_s_atHT07O19u--2e+0At4g27960UBC9 (UBIQUITIN CONJUGATING ENZYME 9)O.I.H.G.S.X.
0.1514.10.95Contig5510_s_atContig5510--1e-1At5g04250OTU-like cysteine protease family proteinO.I.H.G.S.X.
0.1412.90.95Contig7040_atContig7040--6e-8At3g54670TTN8 (TITAN8)O.I.H.G.S.X.
0.1311.60.95Contig10534_s_atContig10534--3e-7At3g14080small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putativeO.I.H.G.S.X.
0.1311.60.95Contig15889_atContig15889--2e+0At4g29590methyltransferaseO.I.H.G.S.X.
0.1210.40.97HW08B21u_s_atHW08B21u--1e+1At5g23903unknown proteinO.I.H.G.S.X.
0.108.40.95Contig12202_atContig12202--2e-1At3g10430F-box family proteinO.I.H.G.S.X.
0.097.40.96Contig19576_x_atContig19576--5e-1At2g29910F-box family proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
8.998.9GSM238413Endosperm 4DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
8.098.7GSM238412Endosperm 4DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
7.598.6GSM238409Pericarp 4DAF; seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.796.9GSM238410Pericarp 8DAF; seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.696.8GSM238408Pericarp 4DAF; seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.496.6GSM238411Pericarp 8DAF; seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.396.4GSM282031Malting_day1_Harrington_rep1GSE11200Expression data from malting barley seedsLink to GEO
4.196.2GSM261046after 3 days in mannitol medium rep2GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
3.194.1GSM238415Endosperm 8DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.194.1GSM311254hsp5_with_aphids_2GSE12584Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines Link to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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