Co-expression analysis

Gene ID	HU07L18r_x_at
Gene name
Homology with Arabidopsis	Similar to At3g07450: protease inhibitor/seed storage/lipid transfer protein (LTP) family protein (HF=2e+0)
Module size	13 genes
NF	0.11
%ile	13.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.92	98.4	0.87	HU07L18r_x_at	HU07L18r	-	-	2e+0	At3g07450	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	O.I.	H.G.	S.X.	Please select
0.23	26.1	0.92	Contig5195_at	Contig5195	-	-	6e-8	At5g63970	copine-related	O.I.	H.G.	S.X.	Please select
0.20	21.1	0.95	Contig6816_at	Contig6816	-	-	2e+0	At4g13640	UNE16 (unfertilized embryo sac 16)	O.I.	H.G.	S.X.	Please select
0.20	21.1	0.94	Contig10422_at	Contig10422	-	-	2e+0	At3g01327	-	O.I.	H.G.	S.X.	Please select
0.17	16.9	0.95	HVSMEl0011L15f2_s_at	HVSMEl0011L15f2	-	-	4e-2	At5g02500	HSC70-1 (HEAT SHOCK COGNATE PROTEIN 70-1)	O.I.	H.G.	S.X.	Please select
0.15	14.1	0.94	Contig7109_at	Contig7109	-	-	1e-1	At2g45480	AtGRF9 (GROWTH-REGULATING FACTOR 9)	O.I.	H.G.	S.X.	Please select
0.14	12.9	0.95	Contig17513_at	Contig17513	-	-	4e-4	At5g06600	UBP12 (UBIQUITIN-SPECIFIC PROTEASE 12)	O.I.	H.G.	S.X.	Please select
0.11	9.4	0.93	Contig5191_at	Contig5191	-	-	1e-11	At4g35310	CPK5 (calmodulin-domain protein kinase 5)	O.I.	H.G.	S.X.	Please select
0.07	5.8	0.93	Contig5465_at	Contig5465	-	-	2e-4	At5g60460	sec61beta family protein	O.I.	H.G.	S.X.	Please select
0.07	5.8	0.93	Contig13058_s_at	Contig13058	-	-	3e-1	At1g72170	unknown protein	O.I.	H.G.	S.X.	Please select
0.07	5.8	0.92	Contig1336_at	Contig1336	-	-	6e-68	At3g56800	CAM3 (CALMODULIN 3)	O.I.	H.G.	S.X.	Please select
0.05	4.1	0.93	Contig20506_at	Contig20506	-	-	1e-4	At2g44410	protein binding / zinc ion binding	O.I.	H.G.	S.X.	Please select
0.04	3.4	0.94	EBem05_SQ001_F02_at	EBem05_SQ001_F02	-	-	8e+0	At5g17240	SDG40 (SET DOMAIN GROUP 40)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
14.3	99.5	GSM238410	Pericarp 8DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
10.0	99.1	GSM261047	after 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
8.4	98.8	GSM261046	after 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
7.9	98.7	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
7.8	98.6	GSM238411	Pericarp 8DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
6.1	98.0	GSM238408	Pericarp 4DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.5	96.7	GSM238409	Pericarp 4DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
4.4	96.6	GSM419983	Seed_Rep3	GSE16754	Comparative transcriptional profiling of organs of the barley spike
4.4	96.6	GSM440977	Control seed_Rep3	GSE17669	Gene expression in the barley spike during drought stress
4.2	96.3	GSM238413	Endosperm 4DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage