Co-expression analysis

Gene ID HT13L01r_at
Gene name
Homology with ArabidopsisSimilar to At5g49010: SLD5 (SYNTHETIC LETHALITY WITH DPB11-1 5) (HF=3e+0)
Module size 11 genes
NF 0.75
%ile 94.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7891.20.89HT13L01r_atHT13L01r--3e+0At5g49010SLD5 (SYNTHETIC LETHALITY WITH DPB11-1 5)O.I.H.G.S.X.
0.9095.70.87Contig11234_atContig11234--7e+0At4g14305-O.I.H.G.S.X.
0.8795.00.88Contig24203_atContig24203--1e+1At5g27090AGL54O.I.H.G.S.X.
0.8694.80.87HM08L19r_atHM08L19r--3e-2At3g09980unknown proteinO.I.H.G.S.X.
0.8694.80.87Contig26356_atContig26356--3e-7At5g23810AAP7O.I.H.G.S.X.
0.8494.30.88Contig25667_s_atContig25667--7e-1At1g24000Bet v I allergen family proteinO.I.H.G.S.X.
0.7589.50.88HVSMEm0012M15r2_atHVSMEm0012M15r2--2e+0At5g27247unknown proteinO.I.H.G.S.X.
0.7086.00.89HT10B20u_atHT10B20u--1e+0At5g56600PRF3 (PROFILIN 3)O.I.H.G.S.X.
0.6077.30.92Contig17965_atContig17965--2e-17At3g15352ATCOX17O.I.H.G.S.X.
0.5874.90.87HB27G16r_atHB27G16r--8e-1At5g06010unknown proteinO.I.H.G.S.X.
0.4762.20.88HF13N11r_x_atHF13N11r--2e+0At5g10260AtRABH1e (Arabidopsis Rab GTPase homolog H1e)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
23.599.8GSM238427Endosperm 72 h; Seed germination; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
18.299.7GSM261053Bonus Hardened rep1GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
16.799.6GSM261054Bonus Hardened rep2GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
14.199.5GSM238422Endosperm 24 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
11.899.3GSM238423Endosperm 24 h; Seed germination; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
9.699.0GSM238426Endosperm 72 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
8.798.9GSM238420Endosperm 0 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
7.598.6GSM261070Albina f-17 Control rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
6.998.3GSM238425Endosperm 48 h; Seed germination; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
5.397.4GSM688913 h control replicate 3GSE3097Barley1 salinity stress studyLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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