CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID HT12H07u_x_at

Gene name
Homology with Arabidopsis Similar to At5g64552: CPuORF22 (Conserved peptide upstream open reading frame 22) (HF=8e+0)

Module size 6 genes

NF 0.56

%ile 78.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.67 84.7 0.92 HT12H07u_x_at HT12H07u - - 8e+0 At5g64552 CPuORF22 (Conserved peptide upstream open reading frame 22) O.I. H.G. S.X.
0.63 80.3 0.92 HU10G19u_x_at HU10G19u - - 1e-1 At4g01150 unknown protein O.I. H.G. S.X.
0.63 80.3 0.93 HA10M13u_x_at HA10M13u - - 6e+0 At5g46980 invertase/pectin methylesterase inhibitor family protein O.I. H.G. S.X.
0.56 74.3 0.92 EBma03_SQ002_M18_at EBma03_SQ002_M18 - - 2e+0 At5g65300 unknown protein O.I. H.G. S.X.
0.44 58.9 0.94 HY05C09u_x_at HY05C09u - - 2e-1 At1g58420 - O.I. H.G. S.X.
0.35 45.1 0.92 HVSMEc0008G05r2_at HVSMEc0008G05r2 - - 4e+0 At4g02000 unknown protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.6 95.3 GSM261024 ABA-Early-rep1 GSE10328 ABA experiment
3.3 94.6 GSM160819 38% SWC rep1 GSE6990 Barley drought stress
3.3 94.6 GSM261021 ABA-Control-rep1 GSE10328 ABA experiment
3.2 94.3 GSM160815 drought control rep3 GSE6990 Barley drought stress
3.2 94.3 GSM261030 Dicktoo-control-rep1 GSE10329 Low temperature stress in cv. Dicktoo
3.1 94.1 GSM261025 ABA-Early-rep2 GSE10328 ABA experiment
3.0 93.8 GSM161200 cold treatment rep1 GSE6993 Barley low temperature stress
2.9 93.4 GSM161220 cold treatment rep2 GSE6993 Barley low temperature stress
2.9 93.4 GSM261032 Dicktoo control-rep3 GSE10329 Low temperature stress in cv. Dicktoo
2.9 93.4 GSM160823 19% SWC rep1 GSE6990 Barley drought stress

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage