Co-expression analysis

Gene ID	HT12E22u_s_at
Gene name
Homology with Arabidopsis	Similar to At2g45695: - (HF=2e+0)
Module size	7 genes
NF	0.43
%ile	59.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.73	88.7	0.85	HT12E22u_s_at	HT12E22u	-	-	2e+0	At2g45695	-	O.I.	H.G.	S.X.	Please select
0.73	88.7	0.84	Contig17966_s_at	Contig17966	-	-	5e-2	At1g34770	MAGE-8 antigen-related	O.I.	H.G.	S.X.	Please select
0.46	61.0	0.91	Contig14116_at	Contig14116	-	-	6e-1	At2g15680	calmodulin-related protein, putative	O.I.	H.G.	S.X.	Please select
0.44	58.9	0.87	Contig12980_at	Contig12980	-	-	2e-9	At4g03110	RNA-binding protein, putative	O.I.	H.G.	S.X.	Please select
0.40	53.1	0.89	Contig24294_at	Contig24294	-	-	5e+0	At4g34590	GBF6 (G-BOX BINDING FACTOR 6)	O.I.	H.G.	S.X.	Please select
0.24	27.2	0.88	Contig6566_at	Contig6566	-	-	5e-1	At1g63960	unknown protein	O.I.	H.G.	S.X.	Please select
0.23	26.1	0.88	Contig8948_at	Contig8948	-	-	8e-7	At5g20910	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
9.9	99.1	GSM238414	Endosperm 8DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
9.3	99.0	GSM215732	gibberellin plus Yariv-reagent treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
8.0	98.7	GSM215729	gibberellin plus Yariv-reagent treatment rep1	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
7.8	98.6	GSM215731	gibberellin treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
7.8	98.6	GSM238424	Endosperm 48 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
7.5	98.6	GSM238412	Endosperm 4DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
7.4	98.5	GSM282031	Malting_day1_Harrington_rep1	GSE11200	Expression data from malting barley seeds
7.3	98.5	GSM215728	gibberellin treatment rep1	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
6.6	98.2	GSM238415	Endosperm 8DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
6.4	98.1	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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