Co-expression analysis

Gene ID HT12E20u_s_at
Gene name
Homology with ArabidopsisSimilar to At1g09660: KH domain-containing quaking protein, putative (HF=3e+0)
Module size 6 genes
NF 0.41
%ile 56.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5975.80.92HT12E20u_s_atHT12E20u--3e+0At1g09660KH domain-containing quaking protein, putativeO.I.H.G.S.X.
0.6784.70.92S0000800150H08F1_x_atS0000800150H08F1--9e-10At5g3553040S ribosomal protein S3 (RPS3C)O.I.H.G.S.X.
0.4356.40.92HT12H07u_x_atHT12H07u--8e+0At5g64552CPuORF22 (Conserved peptide upstream open reading frame 22)O.I.H.G.S.X.
0.4356.40.92HU10G19u_x_atHU10G19u--1e-1At4g01150unknown proteinO.I.H.G.S.X.
0.4053.10.93HVSMEb0006C19r2_atHVSMEb0006C19r2--4e+0At2g27260-O.I.H.G.S.X.
0.1311.60.92HB19A22r_x_atHB19A22r--6e-1At1g69620RPL34 (RIBOSOMAL PROTEIN L34)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
9.999.1GSM238417Endosperm 16DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
8.098.7GSM261029ABA-Late-rep3GSE10328ABA experimentLink to GEO
5.997.9GSM238418Endosperm 25DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
5.897.8GSM161200cold treatment rep1GSE6993Barley low temperature stressLink to GEO
5.497.5GSM261025ABA-Early-rep2GSE10328ABA experimentLink to GEO
5.297.4GSM213436Barley seeds with P. aeruginosa PAO1 for 12hrGSE8618P. aeruginosa virulent factor to barleyLink to GEO
4.997.1GSM213443Barley seeds with P. aeruginosa PA5021 mutant for 12hrGSE8618P. aeruginosa virulent factor to barleyLink to GEO
4.897.0GSM238416Endosperm 16DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.396.4GSM398263HS41-1_0d_rep3GSE15970Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley GenotypesLink to GEO
4.196.2GSM261066Xantha s-46 Hardened rep2GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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