Co-expression analysis

Gene ID HT09J11u_at
Gene name
Homology with ArabidopsisSimilar to At1g43600: NLI interacting factor (NIF) family protein (HF=7e-1)
Module size 26 genes
NF 0.20
%ile 25.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7790.80.89HT09J11u_atHT09J11u--7e-1At1g43600NLI interacting factor (NIF) family proteinO.I.H.G.S.X.
0.4053.10.93HS08C16u_x_atHS08C16u--9e-1At5g53830VQ motif-containing proteinO.I.H.G.S.X.
0.3747.90.92HB04F17r_x_atHB04F17r--2e+1At5g20447unknown proteinO.I.H.G.S.X.
0.3545.10.93HS09I11u_atHS09I11u--1e-6At3g05570unknown proteinO.I.H.G.S.X.
0.3342.60.91HB04F17r_atHB04F17r--2e+1At5g20447unknown proteinO.I.H.G.S.X.
0.3342.60.94Contig18435_atContig18435--3e-1At2g42770peroxisomal membrane 22 kDa family proteinO.I.H.G.S.X.
0.3240.30.91HF21N20r_x_atHF21N20r--2e-1At1g08660glycosyl transferase family 29 protein / sialyltransferase family proteinO.I.H.G.S.X.
0.3138.60.94HT12J09u_x_atHT12J09u--6e-1At3g43490zinc knuckle (CCHC-type) family proteinO.I.H.G.S.X.
0.3037.00.94rbasd18c22_atrbasd18c22--1e+0At1g60250zinc finger (B-box type) family proteinO.I.H.G.S.X.
0.2935.50.93HV09G06u_s_atHV09G06u--4e+0At3g53610ATRAB8O.I.H.G.S.X.
0.2935.50.95HS09A23u_x_atHS09A23u--3e+0At5g20165unknown proteinO.I.H.G.S.X.
0.2427.20.92Contig10691_s_atContig10691--8e-1At1g67330unknown proteinO.I.H.G.S.X.
0.2427.20.95EBro08_SQ004_P19_atEBro08_SQ004_P19--4e+0At2g40170GEA6 (LATE EMBRYOGENESIS ABUNDANT 6)O.I.H.G.S.X.
0.2224.20.93Contig22700_atContig22700--3e-1At4g32208-O.I.H.G.S.X.
0.2122.60.93Contig2803_atContig2803--8e-35At2g30970ASP1 (ASPARTATE AMINOTRANSFERASE 1)O.I.H.G.S.X.
0.2021.10.93HO04H20S_atHO04H20S--3e+0At2g03822unknown proteinO.I.H.G.S.X.
0.1919.60.95HS18M13u_atHS18M13u--9e-1At1g02065SPL8 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 8)O.I.H.G.S.X.
0.1716.90.94Contig10681_atContig10681--1e-1At3g19480D-3-phosphoglycerate dehydrogenase, putative / 3-PGDH, putativeO.I.H.G.S.X.
0.1716.90.94rbaal31p03_s_atrbaal31p03--2e-22At2g47170ARF1A1CO.I.H.G.S.X.
0.1615.30.95EBca01_SQ004_P03_atEBca01_SQ004_P03--2e+0At1g06960small nuclear ribonucleoprotein U2B, putative / spliceosomal protein, putativeO.I.H.G.S.X.
0.1615.30.91HF04B14r_atHF04B14r--3e+0At2g05915unknown proteinO.I.H.G.S.X.
0.1412.90.97EBca01_SQ004_P03_x_atEBca01_SQ004_P03--2e+0At1g06960small nuclear ribonucleoprotein U2B, putative / spliceosomal protein, putativeO.I.H.G.S.X.
0.1311.60.94HW03I20u_x_atHW03I20u--3e+0At4g03540integral membrane family proteinO.I.H.G.S.X.
0.1210.40.96rbags18m16_atrbags18m16--2e+0At2g35790unknown proteinO.I.H.G.S.X.
0.064.80.94Contig8230_atContig8230--3e-24At4g04860DER2.2 (DERLIN-2.2)O.I.H.G.S.X.
0.043.40.92Contig1778_s_atContig1778--2e+0At3g15020malate dehydrogenase (NAD), mitochondrial, putativeO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
9.399.0GSM261047after 3 days in mannitol medium rep3GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
7.798.6GSM261046after 3 days in mannitol medium rep2GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
4.696.8GSM382232Root_Hg1GSE15295Mercury toxicity in barley rootsLink to GEO
4.596.7GSM282031Malting_day1_Harrington_rep1GSE11200Expression data from malting barley seedsLink to GEO
4.496.6GSM382233Root_Hg2GSE15295Mercury toxicity in barley rootsLink to GEO
4.396.4GSM382234Root_Hg3GSE15295Mercury toxicity in barley rootsLink to GEO
3.795.5GSM398253Martin_1d_rep2GSE15970Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley GenotypesLink to GEO
3.595.1GSM261045after 3 days in mannitol medium rep1GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
3.093.8GSM282036Malting_steeped_Morex_rep2GSE11200Expression data from malting barley seedsLink to GEO
2.993.4GSM215729gibberellin plus Yariv-reagent treatment rep1GSE8712The effects of Yariv-reagent on barley aleurone GA signalingLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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