Co-expression analysis

Gene ID	HT09D15r_s_at
Gene name
Homology with Arabidopsis	Similar to At5g46730: glycine-rich protein (HF=3e+0)
Module size	15 genes
NF	0.19
%ile	23.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.93	98.7	0.92	HT09D15r_s_at	HT09D15r	-	-	3e+0	At5g46730	glycine-rich protein	O.I.	H.G.	S.X.	Please select
0.35	45.1	0.94	Contig13863_at	Contig13863	-	-	9e-1	At1g04778	unknown protein	O.I.	H.G.	S.X.	Please select
0.31	38.6	0.95	Contig17591_at	Contig17591	-	-	1e-8	At3g06350	MEE32 (MATERNAL EFFECT EMBRYO ARREST 32)	O.I.	H.G.	S.X.	Please select
0.26	30.4	0.95	Contig16412_at	Contig16412	-	-	1e-13	At1g68100	IAR1 (IAA-ALANINE RESISTANT 1)	O.I.	H.G.	S.X.	Please select
0.23	26.1	0.95	Contig21935_at	Contig21935	-	-	1e+0	At3g49700	ACS9 (1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE 9)	O.I.	H.G.	S.X.	Please select
0.23	26.1	0.95	Contig16579_at	Contig16579	-	-	2e+0	At4g14695	unknown protein	O.I.	H.G.	S.X.	Please select
0.22	24.2	0.95	Contig6879_at	Contig6879	-	-	4e-24	At1g75330	OTC (ORNITHINE CARBAMOYLTRANSFERASE)	O.I.	H.G.	S.X.	Please select
0.22	24.2	0.95	Contig8007_at	Contig8007	-	-	8e-1	At2g38610	KH domain-containing protein	O.I.	H.G.	S.X.	Please select
0.18	18.2	0.95	Contig7798_at	Contig7798	-	-	7e-13	At4g31550	WRKY11	O.I.	H.G.	S.X.	Please select
0.13	11.6	0.95	Contig11095_at	Contig11095	-	-	2e-4	At3g19895	unknown protein	O.I.	H.G.	S.X.	Please select
0.13	11.6	0.93	Contig13746_at	Contig13746	-	-	8e-10	At1g23540	protein kinase family protein	O.I.	H.G.	S.X.	Please select
0.12	10.4	0.95	Contig5074_at	Contig5074	-	-	4e-1	At3g54560	HTA11	O.I.	H.G.	S.X.	Please select
0.12	10.4	0.95	Contig25428_x_at	Contig25428	-	-	5e+0	At5g54430	universal stress protein (USP) family protein	O.I.	H.G.	S.X.	Please select
0.09	7.4	0.94	Contig11766_at	Contig11766	-	-	1e-2	At5g50400	PAP27 (PURPLE ACID PHOSPHATASE 27)	O.I.	H.G.	S.X.	Please select
0.09	7.4	0.95	Contig15411_at	Contig15411	-	-	2e-4	At5g49890	CLC-C (CHLORIDE CHANNEL C)	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
13.8	99.5	GSM238412	Endosperm 4DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
10.6	99.2	GSM419983	Seed_Rep3	GSE16754	Comparative transcriptional profiling of organs of the barley spike
10.6	99.2	GSM440977	Control seed_Rep3	GSE17669	Gene expression in the barley spike during drought stress
9.2	99.0	GSM238414	Endosperm 8DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
8.7	98.9	GSM238413	Endosperm 4DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
8.5	98.8	GSM238415	Endosperm 8DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
5.1	97.3	GSM238430	Embryo 25DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.2	96.3	GSM419981	Seed_Rep1	GSE16754	Comparative transcriptional profiling of organs of the barley spike
4.2	96.3	GSM440975	Control seed_Rep1	GSE17669	Gene expression in the barley spike during drought stress
4.1	96.2	GSM419982	Seed_Rep2	GSE16754	Comparative transcriptional profiling of organs of the barley spike

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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