Co-expression analysis

Gene ID HT08F04u_s_at
Gene name
Homology with ArabidopsisSimilar to At5g49380: - (HF=3e+0)
Module size 20 genes
NF 0.19
%ile 23.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9398.70.89HT08F04u_s_atHT08F04u--3e+0At5g49380-O.I.H.G.S.X.
0.2935.50.92Contig10204_s_atContig10204--1e+0At5g05580FAD8 (FATTY ACID DESATURASE 8)O.I.H.G.S.X.
0.2732.10.94Contig9789_s_atContig9789--4e-14At4g34030MCCB (3-METHYLCROTONYL-COA CARBOXYLASE)O.I.H.G.S.X.
0.2732.10.95Contig5333_s_atContig5333--4e-1At5g62720integral membrane HPP family proteinO.I.H.G.S.X.
0.2528.90.93Contig18549_atContig18549--5e+0At3g44150unknown proteinO.I.H.G.S.X.
0.2326.10.91HV_CEb0004J20f_s_atHV_CEb0004J20f--2e+0At5g63634unknown proteinO.I.H.G.S.X.
0.2021.10.92HVSMEa0001F16r2_atHVSMEa0001F16r2--3e+0At3g52830-O.I.H.G.S.X.
0.1919.60.93Contig3646_atContig3646--4e-9At1g63770peptidase M1 family proteinO.I.H.G.S.X.
0.1919.60.92Contig1412_atContig1412--6e+0At3g55770LIM domain-containing proteinO.I.H.G.S.X.
0.1919.60.93Contig10114_atContig10114--3e-1At3g23800SBP3 (selenium-binding protein 3)O.I.H.G.S.X.
0.1716.90.92Contig14519_atContig14519--4e-8At2g30880pleckstrin homology (PH) domain-containing proteinO.I.H.G.S.X.
0.1716.90.94Contig20334_atContig20334--4e+0At1g09760U2A' (U2 small nuclear ribonucleoprotein A)O.I.H.G.S.X.
0.1615.30.94Contig10934_atContig10934--8e-2At2g22090UBP1 interacting protein 1a (UBA1a)O.I.H.G.S.X.
0.1514.10.93Contig9406_atContig9406--5e-32At2g43945unknown proteinO.I.H.G.S.X.
0.1210.40.95Contig6456_s_atContig6456--4e+0At3g16120dynein light chain, putativeO.I.H.G.S.X.
0.1210.40.92Contig7391_atContig7391--2e-25At5g42000ORMDL family proteinO.I.H.G.S.X.
0.119.40.95Contig5865_atContig5865--2e+1At5g04267unknown proteinO.I.H.G.S.X.
0.108.40.94Contig8068_atContig8068--3e+0At2g30560glycine-rich proteinO.I.H.G.S.X.
0.108.40.94Contig4476_atContig4476--7e-26At5g63620oxidoreductase, zinc-binding dehydrogenase family proteinO.I.H.G.S.X.
0.086.50.92Contig2540_atContig2540--2e-27At3g11500small nuclear ribonucleoprotein G, putative / snRNP-G, putative / Sm protein G, putativeO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.494.8GSM238427Endosperm 72 h; Seed germination; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.194.1GSM310864lina_with_aphids_3GSE12584Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines Link to GEO
3.093.8GSM238422Endosperm 24 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
2.591.9GSM238424Endosperm 48 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
2.591.9GSM398262HS41-1_0d_rep2GSE15970Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley GenotypesLink to GEO
2.591.9GSM146379Maythorpe shoot Salt, biological rep 2GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO
2.290.3GSM282026Malting_day1_Legacy_rep4GSE11200Expression data from malting barley seedsLink to GEO
2.189.7GSM238428Embryo 16DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
2.189.7GSM238408Pericarp 4DAF; seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
2.189.7GSM398250Martin_0d_rep2GSE15970Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley GenotypesLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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