Co-expression analysis

Gene ID HS18F06u_s_at
Gene name
Homology with ArabidopsisSimilar to At2g47610: 60S ribosomal protein L7A (RPL7aA) (HF=7e-14)
Module size 6 genes
NF 0.64
%ile 85.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.10.98HS18F06u_s_atHS18F06u--7e-14At2g4761060S ribosomal protein L7A (RPL7aA)O.I.H.G.S.X.
0.6784.70.98Contig7221_s_atContig7221--6e+0At5g47610zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.6178.70.98Contig16972_atContig16972--5e-10At5g64813LIP1 (Light Insensitive Period1)O.I.H.G.S.X.
0.6178.70.98Contig18703_atContig18703--1e+0At5g48205zinc ion bindingO.I.H.G.S.X.
0.4458.90.99Contig10241_atContig10241--2e-9At1g29120unknown proteinO.I.H.G.S.X.
0.4053.10.98HY09M22u_s_atHY09M22u--3e+0At2g04378beta-galactosidaseO.I.H.G.S.X.

VF%ileCCGene IDRepr. IDGene nameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.8092.50.98Contig18403_atContig18403--3e-1At1g73490RNA recognition motif (RRM)-containing proteinO.I.H.G.S.X.
0.7388.70.98Contig1913_s_atContig1913--2e-46At3g0920060S acidic ribosomal protein P0 (RPP0B)O.I.H.G.S.X.
0.6178.70.93Contig3291_s_atContig3291--5e-4At3g13230RNA bindingO.I.H.G.S.X.
0.5774.90.96Contig7055_atContig7055--1e-5At1g69530ATEXPA1 (ARABIDOPSIS THALIANA EXPANSIN A1)O.I.H.G.S.X.
0.5674.30.98Contig19492_atContig19492--5e-1At5g41340UBC4 (UBIQUITIN CONJUGATING ENZYME 4)O.I.H.G.S.X.
0.5572.00.97Contig16694_atContig16694--2e-3At1g58420-O.I.H.G.S.X.
0.5369.70.96Contig3409_atContig3409--5e-7At5g65260polyadenylate-binding protein family protein / PABP family proteinO.I.H.G.S.X.
0.5066.90.96Contig14891_atContig14891--5e-9At3g61870unknown proteinO.I.H.G.S.X.
0.5066.90.98Contig22688_atContig22688--2e+0At2g01860EMB975 (EMBRYO DEFECTIVE 975)O.I.H.G.S.X.
0.5066.90.98Contig15982_atContig15982--3e-4At3g19290ABF4 (ABRE BINDING FACTOR 4)O.I.H.G.S.X.
0.5066.90.98Contig21003_atContig21003--6e+0At5g17280unknown proteinO.I.H.G.S.X.
0.4458.90.97HY09G23u_s_atHY09G23u--8e-1At5g19510elongation factor 1B alpha-subunit 2 (eEF1Balpha2)O.I.H.G.S.X.
0.4458.90.98EBem09_SQ001_B21_s_atEBem09_SQ001_B21--2e+0At5g36920unknown proteinO.I.H.G.S.X.
0.4356.40.95HB22P12r_x_atHB22P12r--4e-30At1g07930elongation factor 1-alpha / EF-1-alphaO.I.H.G.S.X.
0.4356.40.96HVSMEb0001J09r2_s_atHVSMEb0001J09r2--7e+0At5g45710RHA1 (ROOT HANDEDNESS 1)O.I.H.G.S.X.
0.4356.40.98HA12A08u_s_atHA12A08u--5e-2At1g22780PFL (POINTED FIRST LEAVES)O.I.H.G.S.X.
0.4356.40.98Contig23530_s_atContig23530--8e+0At3g57072unknown proteinO.I.H.G.S.X.
0.4255.20.97Contig5066_atContig5066--7e-1At3g42310unknown proteinO.I.H.G.S.X.
0.4255.20.95HS09O14r_s_atHS09O14r--8e+0At5g24352-O.I.H.G.S.X.
0.4053.10.98HM01F24T_s_atHM01F24T--4e-5At2g3337060S ribosomal protein L23 (RPL23B)O.I.H.G.S.X.
0.4053.10.98Contig14763_atContig14763--2e-1At2g37510RNA-binding protein, putativeO.I.H.G.S.X.
0.4053.10.98Contig18109_atContig18109--2e-15At2g26980CIPK3 (CBL-INTERACTING PROTEIN KINASE 3)O.I.H.G.S.X.
0.4053.10.98rbags18e07_s_atrbags18e07--4e-1At3g58170BS14A (BET1P/SFT1P-LIKE PROTEIN 14A)O.I.H.G.S.X.
0.3950.50.98Contig23732_atContig23732--6e-1At1g05190emb2394 (embryo defective 2394)O.I.H.G.S.X.
0.3849.50.96Contig5119_atContig5119--4e-15At1g26830ATCUL3 (ARABIDOPSIS THALIANA CULLIN 3)O.I.H.G.S.X.
0.3849.50.96Contig21366_atContig21366--2e+0At4g08170inositol 1,3,4-trisphosphate 5/6-kinase family proteinO.I.H.G.S.X.
0.3849.50.95Contig15410_atContig15410--3e-9At3g05520F-actin capping protein alpha subunit family proteinO.I.H.G.S.X.
0.3849.50.98Contig2584_atContig2584--1e-6At3g5389040S ribosomal protein S21 (RPS21B)O.I.H.G.S.X.
0.3747.90.97Contig2975_s_atContig2975--2e+0At2g30860ATGSTF9 (GLUTATHIONE S-TRANSFERASE PHI 9)O.I.H.G.S.X.
0.3647.10.97Contig2047_s_atContig2047--5e-1At3g26932DRB3 (dsRNA-binding protein 3)O.I.H.G.S.X.
0.3647.10.98Contig22905_atContig22905--4e-1At2g3448060S ribosomal protein L18A (RPL18aB)O.I.H.G.S.X.
0.3647.10.99Contig20949_atContig20949--2e+0At4g34150C2 domain-containing proteinO.I.H.G.S.X.
0.3545.10.95Contig34_s_atContig34--4e+0At3g28674unknown proteinO.I.H.G.S.X.
0.3342.60.97HW02F22u_s_atHW02F22u--7e+0At3g14981unknown proteinO.I.H.G.S.X.
0.3342.60.98Contig19387_atContig19387--2e-1At3g30580unknown proteinO.I.H.G.S.X.
0.3240.30.97Contig3675_atContig3675--2e-10At3g55500ATEXPA16 (ARABIDOPSIS THALIANA EXPANSIN A16)O.I.H.G.S.X.
0.3138.60.97Contig15493_atContig15493--1e+0At5g44540tapetum-specific protein-relatedO.I.H.G.S.X.
0.3037.00.92Contig4895_s_atContig4895--2e-3At2g31410unknown proteinO.I.H.G.S.X.
0.3037.00.96Contig9498_atContig9498--3e+0At2g31940unknown proteinO.I.H.G.S.X.
0.3037.00.96Contig4070_s_atContig4070--4e-22At5g65620peptidase M3 family protein / thimet oligopeptidase family proteinO.I.H.G.S.X.
0.3037.00.98EBma03_SQ002_K01_s_atEBma03_SQ002_K01--5e+0At5g63905unknown proteinO.I.H.G.S.X.
0.3037.00.95Contig22268_atContig22268--2e+0At1g2740060S ribosomal protein L17 (RPL17A)O.I.H.G.S.X.
0.2935.50.95Contig14436_atContig14436--4e-1At5g37550unknown proteinO.I.H.G.S.X.
0.2935.50.96Contig13642_atContig13642--9e-1At2g18840integral membrane Yip1 family proteinO.I.H.G.S.X.
0.2935.50.96rbags16m05_s_atrbags16m05--7e-1At2g21150XCT (XAP5 CIRCADIAN TIMEKEEPER)O.I.H.G.S.X.
0.2935.50.97Contig26282_atContig26282--6e+0At4g12350MYB42 (myb domain protein 42)O.I.H.G.S.X.
0.2935.50.98Contig18092_atContig18092--8e-4At1g76680OPR1O.I.H.G.S.X.
0.2835.50.95EBed02_SQ003_L11_s_atEBed02_SQ003_L11--1e-11At3g6077040S ribosomal protein S13 (RPS13A)O.I.H.G.S.X.
0.2835.50.97Contig16002_atContig16002--2e+0At4g31800WRKY18O.I.H.G.S.X.
0.2732.10.95Contig21324_atContig21324--1e-4At5g65140trehalose-6-phosphate phosphatase, putativeO.I.H.G.S.X.


Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
14.599.5GSM311255hsp5_with_aphids_3GSE12584Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines Link to GEO
10.299.1GSM311254hsp5_with_aphids_2GSE12584Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines Link to GEO
10.199.1GSM311256hsp5_without_aphids_1GSE12584Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines Link to GEO
9.699.0GSM311257hsp5_without_aphids_2GSE12584Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines Link to GEO
9.699.0GSM311253hsp5_with_aphids_1GSE12584Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines Link to GEO
8.898.9GSM311258hsp5_without_aphids_3GSE12584Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines Link to GEO
7.398.5GSM282033Malting_day4_Harrington_rep4GSE11200Expression data from malting barley seedsLink to GEO
4.696.8GSM282031Malting_day1_Harrington_rep1GSE11200Expression data from malting barley seedsLink to GEO
4.096.0GSM282036Malting_steeped_Morex_rep2GSE11200Expression data from malting barley seedsLink to GEO
3.795.5GSM238412Endosperm 4DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



Back to the CoP portal site

Back to the KAGIANA project homepage