Co-expression analysis

Gene ID	HS18F06u_s_at
Gene name
Homology with Arabidopsis	Similar to At2g47610: 60S ribosomal protein L7A (RPL7aA) (HF=7e-14)
Module size	6 genes
NF	0.64
%ile	85.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.1	0.98	HS18F06u_s_at	HS18F06u	-	-	7e-14	At2g47610	60S ribosomal protein L7A (RPL7aA)	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.98	Contig7221_s_at	Contig7221	-	-	6e+0	At5g47610	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.61	78.7	0.98	Contig16972_at	Contig16972	-	-	5e-10	At5g64813	LIP1 (Light Insensitive Period1)	O.I.	H.G.	S.X.	Please select
0.61	78.7	0.98	Contig18703_at	Contig18703	-	-	1e+0	At5g48205	zinc ion binding	O.I.	H.G.	S.X.	Please select
0.44	58.9	0.99	Contig10241_at	Contig10241	-	-	2e-9	At1g29120	unknown protein	O.I.	H.G.	S.X.	Please select
0.40	53.1	0.98	HY09M22u_s_at	HY09M22u	-	-	3e+0	At2g04378	beta-galactosidase	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
14.5	99.5	GSM311255	hsp5_with_aphids_3	GSE12584	Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
10.2	99.1	GSM311254	hsp5_with_aphids_2	GSE12584	Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
10.1	99.1	GSM311256	hsp5_without_aphids_1	GSE12584	Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
9.6	99.0	GSM311257	hsp5_without_aphids_2	GSE12584	Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
9.6	99.0	GSM311253	hsp5_with_aphids_1	GSE12584	Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
8.8	98.9	GSM311258	hsp5_without_aphids_3	GSE12584	Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
7.3	98.5	GSM282033	Malting_day4_Harrington_rep4	GSE11200	Expression data from malting barley seeds
4.6	96.8	GSM282031	Malting_day1_Harrington_rep1	GSE11200	Expression data from malting barley seeds
4.0	96.0	GSM282036	Malting_steeped_Morex_rep2	GSE11200	Expression data from malting barley seeds
3.7	95.5	GSM238412	Endosperm 4DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.3289.3.S1_at, orthologous to the query gene, HS18F06u_s_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	91.1	PtpAffx.3289.3.S1_at	At2g47610	hypothetical protein	-	5e-69	At3g62870	60S ribosomal protein L7A (RPL7aB)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.76	94.3	PtpAffx.58971.1.S1_at	At2g47610	hypothetical protein	-	4e-7	At1g73940	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.72	92.7	Ptp.1555.1.S1_at	At2g47610	hypothetical protein	-	7e-31	At3g10950	60S ribosomal protein L37a (RPL37aB)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.57	84.2	Ptp.1424.1.S1_s_at	At2g47610	hypothetical protein	-	3e-14	At3g22230	60S ribosomal protein L27 (RPL27B)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.56	83.9	Ptp.5313.1.S1_s_at	At2g47610	hypothetical protein	-	6e-16	At3g49910	60S ribosomal protein L26 (RPL26A)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.53	80.5	Ptp.5838.1.S1_s_at	At2g47610	hypothetical protein	-	1e-44	At4g27090	60S ribosomal protein L14 (RPL14B)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.53	80.5	PtpAffx.1058.3.S1_s_at	At2g47610	hypothetical protein	-	7e-53	At2g01250	60S ribosomal protein L7 (RPL7B)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	Ptp.6917.1.A1_s_at	At2g47610	hypothetical protein	-	3e-36	At4g29390	40S ribosomal protein S30 (RPS30B)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.48	75.4	Ptp.1555.1.S1_x_at	At2g47610	hypothetical protein	-	7e-31	At3g10950	60S ribosomal protein L37a (RPL37aB)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.44	71.9	Ptp.6762.1.S1_x_at	At2g47610	hypothetical protein	-	2e-33	At5g18380	40S ribosomal protein S16 (RPS16C)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.37	62.3	PtpAffx.37444.1.S1_s_at	At2g47610	hypothetical protein	-	2e-12	At4g15000	60S ribosomal protein L27 (RPL27C)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage