CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID HS18F06u_s_at

Gene name
Homology with Arabidopsis Similar to At2g47610: 60S ribosomal protein L7A (RPL7aA) (HF=7e-14)

Module size 6 genes

NF 0.64

%ile 85.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.1 0.98 HS18F06u_s_at HS18F06u - - 7e-14 At2g47610 60S ribosomal protein L7A (RPL7aA) O.I. H.G. S.X.
0.67 84.7 0.98 Contig7221_s_at Contig7221 - - 6e+0 At5g47610 zinc finger (C3HC4-type RING finger) family protein O.I. H.G. S.X.
0.61 78.7 0.98 Contig16972_at Contig16972 - - 5e-10 At5g64813 LIP1 (Light Insensitive Period1) O.I. H.G. S.X.
0.61 78.7 0.98 Contig18703_at Contig18703 - - 1e+0 At5g48205 zinc ion binding O.I. H.G. S.X.
0.44 58.9 0.99 Contig10241_at Contig10241 - - 2e-9 At1g29120 unknown protein O.I. H.G. S.X.
0.40 53.1 0.98 HY09M22u_s_at HY09M22u - - 3e+0 At2g04378 beta-galactosidase O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
14.5 99.5 GSM311255 hsp5_with_aphids_3 GSE12584 Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
10.2 99.1 GSM311254 hsp5_with_aphids_2 GSE12584 Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
10.1 99.1 GSM311256 hsp5_without_aphids_1 GSE12584 Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
9.6 99.0 GSM311257 hsp5_without_aphids_2 GSE12584 Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
9.6 99.0 GSM311253 hsp5_with_aphids_1 GSE12584 Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
8.8 98.9 GSM311258 hsp5_without_aphids_3 GSE12584 Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
7.3 98.5 GSM282033 Malting_day4_Harrington_rep4 GSE11200 Expression data from malting barley seeds
4.6 96.8 GSM282031 Malting_day1_Harrington_rep1 GSE11200 Expression data from malting barley seeds
4.0 96.0 GSM282036 Malting_steeped_Morex_rep2 GSE11200 Expression data from malting barley seeds
3.7 95.5 GSM238412 Endosperm 4DAF; Seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains

Inter-species module comparison

A co-expression module including the rice gene, Os01g0924800, orthologous to the query gene, HS18F06u_s_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.60 79.7 Os01g0924800 At2g47610 - 60S ribosomal protein L7a 6e-53 At3g62870 60S ribosomal protein L7A (RPL7aB) O.I. H.G. S.X.
0.60 79.7 Os03g0439800 At2g47610 - Conserved hypothetical protein 3e+0 At2g03955 - O.I. H.G. S.X.
0.31 34.5 Os02g0180500 At2g47610 - Chorismate mutase CM2 (EC 5.4.99.5) (Chorimatemutase) 2e-1 At2g36410 unknown protein O.I. H.G. S.X.
0.17 12.6 Os02g0600100 At2g47610 - Proteasome component region PCI domain containingprotein 7e-35 At4g24820 26S proteasome regulatory subunit, putative (RPN7) O.I. H.G. S.X.
0.13 8.2 Os01g0889000 At2g47610 - TPR-like domain containing protein 1e-3 At1g67680 7S RNA binding O.I. H.G. S.X.
0.06 3.0 Os10g0483900 At2g47610 - Conserved hypothetical protein 2e+0 At3g55880 unknown protein O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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