CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID HS09L05u_at

Gene name
Homology with Arabidopsis Similar to At5g45350: proline-rich family protein (HF=4e+0)

Module size 6 genes

NF 0.28

%ile 36.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.53 69.7 0.91 HS09L05u_at HS09L05u - - 4e+0 At5g45350 proline-rich family protein O.I. H.G. S.X.
0.44 58.9 0.92 Contig19672_at Contig19672 - - 5e-7 At3g09980 unknown protein O.I. H.G. S.X.
0.44 58.9 0.94 Contig4608_at Contig4608 - - 3e-9 At1g12840 DET3 (DE-ETIOLATED 3) O.I. H.G. S.X.
0.23 26.1 0.94 Contig20086_s_at Contig20086 - - 1e+0 At5g57570 - O.I. H.G. S.X.
0.20 21.1 0.94 Contig9680_at Contig9680 - - 6e-2 At3g23050 IAA7 (INDOLE-3-ACETIC ACID 7) O.I. H.G. S.X.
0.10 8.4 0.92 Contig2433_s_at Contig2433 - - 9e-9 At4g29260 acid phosphatase class B family protein O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.73	88.7	0.86	HU12P21u_at	HU12P21u	-	-	6e+0	At5g27238	-	O.I.	H.G.	S.X.
0.67	84.7	0.88	Contig11711_at	Contig11711	-	-	1e-4	At4g13510	AMT1	O.I.	H.G.	S.X.
0.55	72.0	0.90	Contig19745_s_at	Contig19745	-	-	4e+0	At5g44430	PDF1.2c (plant defensin 1.2c)	O.I.	H.G.	S.X.
0.44	58.9	0.92	HV_CEa0006F12r2_s_at	HV_CEa0006F12r2	-	-	9e-1	At1g71470	unknown protein	O.I.	H.G.	S.X.
0.40	53.1	0.86	Contig10573_s_at	Contig10573	-	-	9e-12	At4g29520	-	O.I.	H.G.	S.X.
0.33	42.6	0.86	HVSMEi0012K07r2_s_at	HVSMEi0012K07r2	-	-	1e+1	At5g15910	dehydrogenase-related	O.I.	H.G.	S.X.
0.33	42.6	0.88	Contig10699_at	Contig10699	Mg-protoporphyrin IX	-	2e-23	At1g08520	CHLD	O.I.	H.G.	S.X.
0.33	42.6	0.89	Contig18811_at	Contig18811	-	-	6e-1	At3g06435	Expressed protein	O.I.	H.G.	S.X.
0.33	42.6	0.90	Contig13202_at	Contig13202	-	-	2e+0	At3g02150	PTF1 (PLASTID TRANSCRIPTION FACTOR 1)	O.I.	H.G.	S.X.
0.31	38.6	0.92	Contig12315_at	Contig12315	-	-	7e-3	At1g71865	unknown protein	O.I.	H.G.	S.X.
0.31	38.6	0.93	Contig7404_at	Contig7404	-	-	2e+0	At5g65740	protein binding / zinc ion binding	O.I.	H.G.	S.X.
0.27	32.1	0.91	Contig17251_s_at	Contig17251	-	-	1e+1	At4g33355	lipid binding	O.I.	H.G.	S.X.
0.27	32.1	0.91	Contig10566_at	Contig10566	-	-	2e-1	At1g50120	-	O.I.	H.G.	S.X.
0.25	28.9	0.87	Contig25620_at	Contig25620	-	-	1e+0	At1g14860	atnudt18 (Arabidopsis thaliana Nudix hydrolase homolog 18)	O.I.	H.G.	S.X.

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
9.8 99.1 GSM238431 Embryo 25DAF; Seed development; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
8.2 98.7 GSM238432 Embryo 0 h; Seed germination; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
8.0 98.7 GSM238430 Embryo 25DAF; Seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
6.8 98.3 GSM238433 Embryo 0 h; Seed germination; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
6.2 98.0 GSM282041 Control_dryseed_Morex_rep2 GSE11200 Expression data from malting barley seeds
5.9 97.9 GSM238434 Embryo 24 h; Seed germination; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
5.2 97.4 GSM282033 Malting_day4_Harrington_rep4 GSE11200 Expression data from malting barley seeds
4.7 96.9 GSM282036 Malting_steeped_Morex_rep2 GSE11200 Expression data from malting barley seeds
4.6 96.8 GSM282031 Malting_day1_Harrington_rep1 GSE11200 Expression data from malting barley seeds
4.2 96.3 GSM238428 Embryo 16DAF; Seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage