CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID HS09L05u_at

Gene name
Homology with Arabidopsis Similar to At5g45350: proline-rich family protein (HF=4e+0)

Module size 6 genes

NF 0.28

%ile 36.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.53 69.7 0.91 HS09L05u_at HS09L05u - - 4e+0 At5g45350 proline-rich family protein O.I. H.G. S.X.
0.44 58.9 0.92 Contig19672_at Contig19672 - - 5e-7 At3g09980 unknown protein O.I. H.G. S.X.
0.44 58.9 0.94 Contig4608_at Contig4608 - - 3e-9 At1g12840 DET3 (DE-ETIOLATED 3) O.I. H.G. S.X.
0.23 26.1 0.94 Contig20086_s_at Contig20086 - - 1e+0 At5g57570 - O.I. H.G. S.X.
0.20 21.1 0.94 Contig9680_at Contig9680 - - 6e-2 At3g23050 IAA7 (INDOLE-3-ACETIC ACID 7) O.I. H.G. S.X.
0.10 8.4 0.92 Contig2433_s_at Contig2433 - - 9e-9 At4g29260 acid phosphatase class B family protein O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
9.8 99.1 GSM238431 Embryo 25DAF; Seed development; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
8.2 98.7 GSM238432 Embryo 0 h; Seed germination; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
8.0 98.7 GSM238430 Embryo 25DAF; Seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
6.8 98.3 GSM238433 Embryo 0 h; Seed germination; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
6.2 98.0 GSM282041 Control_dryseed_Morex_rep2 GSE11200 Expression data from malting barley seeds
5.9 97.9 GSM238434 Embryo 24 h; Seed germination; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
5.2 97.4 GSM282033 Malting_day4_Harrington_rep4 GSE11200 Expression data from malting barley seeds
4.7 96.9 GSM282036 Malting_steeped_Morex_rep2 GSE11200 Expression data from malting barley seeds
4.6 96.8 GSM282031 Malting_day1_Harrington_rep1 GSE11200 Expression data from malting barley seeds
4.2 96.3 GSM238428 Embryo 16DAF; Seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains

Inter-species module comparison

A co-expression module including the maize gene, Zm.17762.1.S1_at, orthologous to the query gene, HS09L05u_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.53 69.1 Zm.17762.1.S1_at At5g45350 hydrophobic protein LTI6B - 4e-3 At3g05890 RCI2B (RARE-COLD-INDUCIBLE 2B) O.I. H.G. S.X.
0.30 29.8 Zm.8468.1.A1_at At5g45350 gibberellin receptor GID1L2 - 6e+0 At3g45480 zinc ion binding O.I. H.G. S.X.
0.29 28.1 Zm.8459.1.A1_at At5g45350 cell division control protein 50 - 1e-9 At1g16360 LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein O.I. H.G. S.X.
0.27 24.6 Zm.8142.1.A1_at At5g45350 hypothetical protein LOC100275043 - 4e-4 At1g05420 OFP12 (OVATE FAMILY PROTEIN 12) O.I. H.G. S.X.
0.27 24.6 Zm.1666.1.S1_at At5g45350 Hypothetical protein LOC100191200 - 7e-1 At3g04640 glycine-rich protein O.I. H.G. S.X.
0.25 21.3 Zm.10516.1.S1_at At5g45350 - - 5e+0 At5g03840 TFL1 (TERMINAL FLOWER 1) O.I. H.G. S.X.
0.17 10.6 Zm.7657.1.A1_at At5g45350 hypothetical protein LOC100278001 - 1e+0 At1g53540 17.6 kDa class I small heat shock protein (HSP17.6C-CI) (AA 1-156) O.I. H.G. S.X.
0.15 8.6 Zm.3662.1.A1_s_at At5g45350 hypothetical protein LOC100280024 - 2e-1 At1g22990 heavy-metal-associated domain-containing protein / copper chaperone (CCH)-related O.I. H.G. S.X.
0.05 1.9 Zm.9440.1.A1_at At5g45350 snRK1-interacting protein 1 - 3e-14 At5g47870 unknown protein O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera

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