Co-expression analysis

Gene ID	HS09L05u_at
Gene name
Homology with Arabidopsis	Similar to At5g45350: proline-rich family protein (HF=4e+0)
Module size	6 genes
NF	0.28
%ile	36.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.53	69.7	0.91	HS09L05u_at	HS09L05u	-	-	4e+0	At5g45350	proline-rich family protein	O.I.	H.G.	S.X.	Please select
0.44	58.9	0.92	Contig19672_at	Contig19672	-	-	5e-7	At3g09980	unknown protein	O.I.	H.G.	S.X.	Please select
0.44	58.9	0.94	Contig4608_at	Contig4608	-	-	3e-9	At1g12840	DET3 (DE-ETIOLATED 3)	O.I.	H.G.	S.X.	Please select
0.23	26.1	0.94	Contig20086_s_at	Contig20086	-	-	1e+0	At5g57570	-	O.I.	H.G.	S.X.	Please select
0.20	21.1	0.94	Contig9680_at	Contig9680	-	-	6e-2	At3g23050	IAA7 (INDOLE-3-ACETIC ACID 7)	O.I.	H.G.	S.X.	Please select
0.10	8.4	0.92	Contig2433_s_at	Contig2433	-	-	9e-9	At4g29260	acid phosphatase class B family protein	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
9.8	99.1	GSM238431	Embryo 25DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
8.2	98.7	GSM238432	Embryo 0 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
8.0	98.7	GSM238430	Embryo 25DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
6.8	98.3	GSM238433	Embryo 0 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
6.2	98.0	GSM282041	Control_dryseed_Morex_rep2	GSE11200	Expression data from malting barley seeds
5.9	97.9	GSM238434	Embryo 24 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.2	97.4	GSM282033	Malting_day4_Harrington_rep4	GSE11200	Expression data from malting barley seeds
4.7	96.9	GSM282036	Malting_steeped_Morex_rep2	GSE11200	Expression data from malting barley seeds
4.6	96.8	GSM282031	Malting_day1_Harrington_rep1	GSE11200	Expression data from malting barley seeds
4.2	96.3	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains

Inter-species module comparison

A co-expression module including the wheat gene, Ta.24724.2.S1_at, orthologous to the query gene, HS09L05u_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.71	88.0	Ta.24724.2.S1_at	At5g45350	-	-	4e-4	At2g38905	hydrophobic protein, putative / low temperature and salt responsive protein, putative	O.I.	H.G.	S.X.	Please select
0.55	76.8	Ta.21153.1.A1_x_at	At5g45350	-	-	6e+0	At5g09470	mitochondrial substrate carrier family protein	O.I.	H.G.	S.X.	Please select
0.44	64.5	Ta.6521.2.S1_at	At5g45350	-	-	1e+0	At4g26810	SWIB complex BAF60b domain-containing protein	O.I.	H.G.	S.X.	Please select
0.33	46.9	Ta.6521.1.S1_at	At5g45350	-	-	2e+0	At1g28200	FIP1 (FH INTERACTING PROTEIN 1)	O.I.	H.G.	S.X.	Please select
0.30	40.9	Ta.5369.1.A1_s_at	At5g45350	ethylene-responsive factor-like transcription factor ERFL2a	-	5e+0	At4g09590	NHL22	O.I.	H.G.	S.X.	Please select
0.25	32.1	Ta.23127.2.S1_x_at	At5g45350	-	-	2e-1	At5g07600	oleosin / glycine-rich protein	O.I.	H.G.	S.X.	Please select
0.18	21.0	Ta.24664.1.S1_at	At5g45350	-	-	2e+1	At5g38650	proteasome maturation factor UMP1 family protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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