CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID HS09L05u_at

Gene name
Homology with Arabidopsis Similar to At5g45350: proline-rich family protein (HF=4e+0)

Module size 6 genes

NF 0.28

%ile 36.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.53 69.7 0.91 HS09L05u_at HS09L05u - - 4e+0 At5g45350 proline-rich family protein O.I. H.G. S.X.
0.44 58.9 0.92 Contig19672_at Contig19672 - - 5e-7 At3g09980 unknown protein O.I. H.G. S.X.
0.44 58.9 0.94 Contig4608_at Contig4608 - - 3e-9 At1g12840 DET3 (DE-ETIOLATED 3) O.I. H.G. S.X.
0.23 26.1 0.94 Contig20086_s_at Contig20086 - - 1e+0 At5g57570 - O.I. H.G. S.X.
0.20 21.1 0.94 Contig9680_at Contig9680 - - 6e-2 At3g23050 IAA7 (INDOLE-3-ACETIC ACID 7) O.I. H.G. S.X.
0.10 8.4 0.92 Contig2433_s_at Contig2433 - - 9e-9 At4g29260 acid phosphatase class B family protein O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
9.8 99.1 GSM238431 Embryo 25DAF; Seed development; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
8.2 98.7 GSM238432 Embryo 0 h; Seed germination; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
8.0 98.7 GSM238430 Embryo 25DAF; Seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
6.8 98.3 GSM238433 Embryo 0 h; Seed germination; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
6.2 98.0 GSM282041 Control_dryseed_Morex_rep2 GSE11200 Expression data from malting barley seeds
5.9 97.9 GSM238434 Embryo 24 h; Seed germination; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
5.2 97.4 GSM282033 Malting_day4_Harrington_rep4 GSE11200 Expression data from malting barley seeds
4.7 96.9 GSM282036 Malting_steeped_Morex_rep2 GSE11200 Expression data from malting barley seeds
4.6 96.8 GSM282031 Malting_day1_Harrington_rep1 GSE11200 Expression data from malting barley seeds
4.2 96.3 GSM238428 Embryo 16DAF; Seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At5g45350, orthologous to the query gene, HS09L05u_at

VF %ile Gene ID Repr. ID Gene Name Func. O.I. H.G. S.X. Other DB
0.57 73.8 At5g45350 834571 proline-rich family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPBFOVA O.I. H.G. S.X.
0.46 59.8 At5g64240 836545 AtMC3 (metacaspase 3) F:cysteine-type endopeptidase activity;P:proteolysis;C:unknown;BFOPA O.I. H.G. S.X.
0.33 38.1 At4g19840 827728 ATPP2-A1 encodes a protein similar to phloem lectin in cucumber and celery. Gene is expressed in the phloem, predominantly in the companion cells. O.I. H.G. S.X.
0.18 11.4 At1g22710 838877 SUC2 (SUCROSE-PROTON SYMPORTER 2) Encodes for a high-affinity transporter essential for phloem loading and long-distance transport. A major sucrose transporter, AtSUC2 can also transport a wide range of physiological and synthetic glucose conjugates with both α- or β-linkage. O.I. H.G. S.X.
0.01 0.2 At2g06530 815211 VPS2.1 F:unknown;P:vesicle-mediated transport;C:ESCRT III complex;MPFOBAV O.I. H.G. S.X.
0.00 0.0 At5g13810 831226 glutaredoxin family protein F:electron carrier activity, protein disulfide oxidoreductase activity;P:cell redox homeostasis;C:unknown;POMBF O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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