CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID HS08H05u_at

Gene name
Homology with Arabidopsis Similar to At5g60460: sec61beta family protein (HF=2e-4)

Module size 7 genes

NF 0.46

%ile 64.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.53 69.7 0.95 HS08H05u_at HS08H05u - - 2e-4 At5g60460 sec61beta family protein O.I. H.G. S.X.
0.53 69.7 0.96 Contig14154_at Contig14154 - - 2e+0 At1g60320 Toll-Interleukin-Resistance (TIR) domain-containing protein O.I. H.G. S.X.
0.52 68.3 0.96 Contig11372_at Contig11372 - - 5e-7 At3g27100 - O.I. H.G. S.X.
0.43 56.4 0.96 Contig6860_at Contig6860 - - 8e-4 At5g66815 unknown protein O.I. H.G. S.X.
0.42 55.2 0.95 Contig167_x_at Contig167 - - 2e-8 At1g08880 H2AXA O.I. H.G. S.X.
0.36 47.1 0.96 Contig416_x_at Contig416 - - 5e-29 At4g24190 SHD (SHEPHERD) O.I. H.G. S.X.
0.31 38.6 0.96 Contig10954_at Contig10954 - - 4e+0 At3g21175 ZML1 (ZIM-LIKE 1) O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.53	69.7	0.95	HS08H05u_at	HS08H05u	-	-	2e-4	At5g60460	sec61beta family protein	O.I.	H.G.	S.X.
0.53	69.7	0.96	Contig14154_at	Contig14154	-	-	2e+0	At1g60320	Toll-Interleukin-Resistance (TIR) domain-containing protein	O.I.	H.G.	S.X.
0.52	68.3	0.96	Contig11372_at	Contig11372	-	-	5e-7	At3g27100	-	O.I.	H.G.	S.X.
0.43	56.4	0.96	Contig6860_at	Contig6860	-	-	8e-4	At5g66815	unknown protein	O.I.	H.G.	S.X.
0.42	55.2	0.95	Contig167_x_at	Contig167	-	-	2e-8	At1g08880	H2AXA	O.I.	H.G.	S.X.
0.36	47.1	0.96	Contig416_x_at	Contig416	-	-	5e-29	At4g24190	SHD (SHEPHERD)	O.I.	H.G.	S.X.
0.31	38.6	0.96	Contig10954_at	Contig10954	-	-	4e+0	At3g21175	ZML1 (ZIM-LIKE 1)	O.I.	H.G.	S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.61	78.7	0.95	Contig20472_at	Contig20472	-	-	1e+0	At2g35460	harpin-induced family protein / HIN1 family protein / harpin-responsive family protein	O.I.	H.G.	S.X.
0.57	74.9	0.93	Contig12523_s_at	Contig12523	-	-	3e+0	At3g11580	DNA-binding protein, putative	O.I.	H.G.	S.X.
0.40	53.1	0.94	Contig4673_at	Contig4673	-	-	1e-65	At5g49910	CPHSC70-2EAT SHOCK PROTEIN 70-2 (CHLOROPLAST HEAT SHOCK PROTEIN 70-2)	O.I.	H.G.	S.X.
0.38	49.5	0.94	Contig8592_at	Contig8592	-	-	7e-1	At3g17090	protein phosphatase 2C family protein / PP2C family protein	O.I.	H.G.	S.X.
0.37	47.9	0.96	Contig6890_at	Contig6890	-	-	4e+0	At5g34581	hydroxyproline-rich glycoprotein family protein	O.I.	H.G.	S.X.
0.36	47.1	0.96	Contig13788_at	Contig13788	-	-	3e+0	At3g18215	unknown protein	O.I.	H.G.	S.X.
0.36	47.1	0.96	Contig12594_at	Contig12594	-	-	3e+0	At5g11990	proline-rich family protein	O.I.	H.G.	S.X.
0.34	43.6	0.94	Contig20397_at	Contig20397	-	-	2e-3	At1g53420	serine/threonine protein kinase-related	O.I.	H.G.	S.X.
0.33	42.6	0.95	Contig8563_at	Contig8563	-	-	3e-2	At3g04990	-	O.I.	H.G.	S.X.
0.33	42.6	0.95	Contig16760_at	Contig16760	-	-	1e+0	At1g05385	photosystem II 11 kDa protein-related	O.I.	H.G.	S.X.
0.33	42.6	0.95	Contig12718_at	Contig12718	-	-	1e-1	At2g44590	ADL1D (ARABIDOPSIS DYNAMIN-RELATED PROTEIN 1D)	O.I.	H.G.	S.X.
0.33	42.6	0.95	Contig7030_at	Contig7030	-	-	9e-1	At1g15740	leucine-rich repeat family protein	O.I.	H.G.	S.X.
0.33	42.6	0.96	Contig16423_at	Contig16423	-	-	2e+0	At3g02580	STE1 (STEROL 1)	O.I.	H.G.	S.X.
0.32	40.3	0.93	Contig10479_at	Contig10479	-	-	2e+0	At3g22820	allergen-related	O.I.	H.G.	S.X.
0.32	40.3	0.96	Contig15165_s_at	Contig15165	-	-	2e+0	At3g28460	unknown protein	O.I.	H.G.	S.X.
0.31	38.6	0.96	Contig3337_at	Contig3337	-	-	5e-50	At5g59840	Ras-related GTP-binding family protein	O.I.	H.G.	S.X.
0.29	35.5	0.94	Contig4507_at	Contig4507	-	-	6e+0	At1g61760	harpin-induced protein-related / HIN1-related / harpin-responsive protein-related	O.I.	H.G.	S.X.
0.29	35.5	0.94	Contig9331_s_at	Contig9331	-	-	2e-2	At5g41190	-	O.I.	H.G.	S.X.
0.29	35.5	0.94	Contig23551_at	Contig23551	-	-	4e+0	At5g26050	-	O.I.	H.G.	S.X.
0.29	35.5	0.95	Contig1302_at	Contig1302	-	-	1e-5	At1g20580	small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative	O.I.	H.G.	S.X.
0.29	35.5	0.95	Contig3335_at	Contig3335	-	-	3e-67	At5g59840	Ras-related GTP-binding family protein	O.I.	H.G.	S.X.
0.29	35.5	0.95	Contig3334_at	Contig3334	-	-	2e-53	At3g53610	ATRAB8	O.I.	H.G.	S.X.
0.29	35.5	0.96	Contig3332_at	Contig3332	-	-	2e-1	At3g21215	RNA-binding protein, putative	O.I.	H.G.	S.X.
0.28	35.5	0.92	Contig16526_at	Contig16526	-	-	2e-3	At3g05741	enzyme inhibitor/ pectinesterase	O.I.	H.G.	S.X.
0.28	35.5	0.95	Contig15096_s_at	Contig15096	-	-	2e-1	At5g51720	unknown protein	O.I.	H.G.	S.X.
0.27	32.1	0.95	Contig19303_at	Contig19303	-	-	4e-1	At2g47490	mitochondrial substrate carrier family protein	O.I.	H.G.	S.X.
0.27	32.1	0.96	Contig9081_at	Contig9081	-	-	4e+0	At3g17350	unknown protein	O.I.	H.G.	S.X.
0.27	32.1	0.96	Contig4737_s_at	Contig4737	-	-	3e-29	At2g35040	AICARFT/IMPCHase bienzyme family protein	O.I.	H.G.	S.X.
0.26	30.4	0.93	Contig7765_at	Contig7765	-	-	5e-55	At4g34450	coatomer gamma-2 subunit, putative / gamma-2 coat protein, putative / gamma-2 COP, putative	O.I.	H.G.	S.X.
0.25	28.9	0.96	rbaak4i15_s_at	rbaak4i15	-	-	2e-6	At5g08680	ATP synthase beta chain, mitochondrial, putative	O.I.	H.G.	S.X.

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
13.1 99.4 GSM398264 HS41-1_1d_rep1 GSE15970 Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
9.4 99.0 GSM398265 HS41-1_1d_rep2 GSE15970 Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
7.5 98.6 GSM398261 HS41-1_0d_rep1 GSE15970 Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
5.0 97.2 GSM382234 Root_Hg3 GSE15295 Mercury toxicity in barley roots
4.3 96.4 GSM398251 Martin_0d_rep3 GSE15970 Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
4.1 96.2 GSM382232 Root_Hg1 GSE15295 Mercury toxicity in barley roots
3.9 95.8 GSM382233 Root_Hg2 GSE15295 Mercury toxicity in barley roots
3.6 95.3 GSM311257 hsp5_without_aphids_2 GSE12584 Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
3.5 95.1 GSM161148 7% SWC rep3 GSE6990 Barley drought stress
3.4 94.8 GSM160823 19% SWC rep1 GSE6990 Barley drought stress

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
13.1	99.4	GSM398264	HS41-1_1d_rep1	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
9.4	99.0	GSM398265	HS41-1_1d_rep2	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
7.5	98.6	GSM398261	HS41-1_0d_rep1	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
5.0	97.2	GSM382234	Root_Hg3	GSE15295	Mercury toxicity in barley roots
4.3	96.4	GSM398251	Martin_0d_rep3	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
4.1	96.2	GSM382232	Root_Hg1	GSE15295	Mercury toxicity in barley roots
3.9	95.8	GSM382233	Root_Hg2	GSE15295	Mercury toxicity in barley roots
3.6	95.3	GSM311257	hsp5_without_aphids_2	GSE12584	Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
3.5	95.1	GSM161148	7% SWC rep3	GSE6990	Barley drought stress
3.4	94.8	GSM160823	19% SWC rep1	GSE6990	Barley drought stress

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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Gene ID	HS08H05u_at
Gene name
Homology with Arabidopsis	Similar to At5g60460: sec61beta family protein (HF=2e-4)
Module size	7 genes
NF	0.46
%ile	64.7

Co-expression analysis

Gene ID HS08H05u_at Gene name Homology with ArabidopsisSimilar to At5g60460: sec61beta family protein (HF=2e-4) Module size 7 genes NF 0.46 %ile 64.7

Co-expressed genes

Specific experiments for the module

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaGlycine_maxOryza_sativaPopulus_trichocarpaTriticum_aestivumVitis_viniferaZea_mays

Gene ID HS08H05u_at

Gene name
Homology with Arabidopsis Similar to At5g60460: sec61beta family protein (HF=2e-4)

Module size 7 genes

NF 0.46

%ile 64.7

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays