Co-expression analysis

Gene ID HS08H05u_at
Gene name
Homology with ArabidopsisSimilar to At5g60460: sec61beta family protein (HF=2e-4)
Module size 7 genes
NF 0.46
%ile 64.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5369.70.95HS08H05u_atHS08H05u--2e-4At5g60460sec61beta family proteinO.I.H.G.S.X.
0.5369.70.96Contig14154_atContig14154--2e+0At1g60320Toll-Interleukin-Resistance (TIR) domain-containing proteinO.I.H.G.S.X.
0.5268.30.96Contig11372_atContig11372--5e-7At3g27100-O.I.H.G.S.X.
0.4356.40.96Contig6860_atContig6860--8e-4At5g66815unknown proteinO.I.H.G.S.X.
0.4255.20.95Contig167_x_atContig167--2e-8At1g08880H2AXAO.I.H.G.S.X.
0.3647.10.96Contig416_x_atContig416--5e-29At4g24190SHD (SHEPHERD)O.I.H.G.S.X.
0.3138.60.96Contig10954_atContig10954--4e+0At3g21175ZML1 (ZIM-LIKE 1)O.I.H.G.S.X.

VF%ileCCGene IDRepr. IDGene nameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.6178.70.95Contig20472_atContig20472--1e+0At2g35460harpin-induced family protein / HIN1 family protein / harpin-responsive family proteinO.I.H.G.S.X.
0.5774.90.93Contig12523_s_atContig12523--3e+0At3g11580DNA-binding protein, putativeO.I.H.G.S.X.
0.4053.10.94Contig4673_atContig4673--1e-65At5g49910CPHSC70-2EAT SHOCK PROTEIN 70-2 (CHLOROPLAST HEAT SHOCK PROTEIN 70-2)O.I.H.G.S.X.
0.3849.50.94Contig8592_atContig8592--7e-1At3g17090protein phosphatase 2C family protein / PP2C family proteinO.I.H.G.S.X.
0.3747.90.96Contig6890_atContig6890--4e+0At5g34581hydroxyproline-rich glycoprotein family proteinO.I.H.G.S.X.
0.3647.10.96Contig13788_atContig13788--3e+0At3g18215unknown proteinO.I.H.G.S.X.
0.3647.10.96Contig12594_atContig12594--3e+0At5g11990proline-rich family proteinO.I.H.G.S.X.
0.3443.60.94Contig20397_atContig20397--2e-3At1g53420serine/threonine protein kinase-relatedO.I.H.G.S.X.
0.3342.60.95Contig8563_atContig8563--3e-2At3g04990-O.I.H.G.S.X.
0.3342.60.95Contig16760_atContig16760--1e+0At1g05385photosystem II 11 kDa protein-relatedO.I.H.G.S.X.
0.3342.60.95Contig12718_atContig12718--1e-1At2g44590ADL1D (ARABIDOPSIS DYNAMIN-RELATED PROTEIN 1D)O.I.H.G.S.X.
0.3342.60.95Contig7030_atContig7030--9e-1At1g15740leucine-rich repeat family proteinO.I.H.G.S.X.
0.3342.60.96Contig16423_atContig16423--2e+0At3g02580STE1 (STEROL 1)O.I.H.G.S.X.
0.3240.30.93Contig10479_atContig10479--2e+0At3g22820allergen-relatedO.I.H.G.S.X.
0.3240.30.96Contig15165_s_atContig15165--2e+0At3g28460unknown proteinO.I.H.G.S.X.
0.3138.60.96Contig3337_atContig3337--5e-50At5g59840Ras-related GTP-binding family proteinO.I.H.G.S.X.
0.2935.50.94Contig4507_atContig4507--6e+0At1g61760harpin-induced protein-related / HIN1-related / harpin-responsive protein-relatedO.I.H.G.S.X.
0.2935.50.94Contig9331_s_atContig9331--2e-2At5g41190-O.I.H.G.S.X.
0.2935.50.94Contig23551_atContig23551--4e+0At5g26050-O.I.H.G.S.X.
0.2935.50.95Contig1302_atContig1302--1e-5At1g20580small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putativeO.I.H.G.S.X.
0.2935.50.95Contig3335_atContig3335--3e-67At5g59840Ras-related GTP-binding family proteinO.I.H.G.S.X.
0.2935.50.95Contig3334_atContig3334--2e-53At3g53610ATRAB8O.I.H.G.S.X.
0.2935.50.96Contig3332_atContig3332--2e-1At3g21215RNA-binding protein, putativeO.I.H.G.S.X.
0.2835.50.92Contig16526_atContig16526--2e-3At3g05741enzyme inhibitor/ pectinesteraseO.I.H.G.S.X.
0.2835.50.95Contig15096_s_atContig15096--2e-1At5g51720unknown proteinO.I.H.G.S.X.
0.2732.10.95Contig19303_atContig19303--4e-1At2g47490mitochondrial substrate carrier family proteinO.I.H.G.S.X.
0.2732.10.96Contig9081_atContig9081--4e+0At3g17350unknown proteinO.I.H.G.S.X.
0.2732.10.96Contig4737_s_atContig4737--3e-29At2g35040AICARFT/IMPCHase bienzyme family proteinO.I.H.G.S.X.
0.2630.40.93Contig7765_atContig7765--5e-55At4g34450coatomer gamma-2 subunit, putative / gamma-2 coat protein, putative / gamma-2 COP, putativeO.I.H.G.S.X.
0.2528.90.96rbaak4i15_s_atrbaak4i15--2e-6At5g08680ATP synthase beta chain, mitochondrial, putativeO.I.H.G.S.X.


Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
13.199.4GSM398264HS41-1_1d_rep1GSE15970Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley GenotypesLink to GEO
9.499.0GSM398265HS41-1_1d_rep2GSE15970Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley GenotypesLink to GEO
7.598.6GSM398261HS41-1_0d_rep1GSE15970Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley GenotypesLink to GEO
5.097.2GSM382234Root_Hg3GSE15295Mercury toxicity in barley rootsLink to GEO
4.396.4GSM398251Martin_0d_rep3GSE15970Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley GenotypesLink to GEO
4.196.2GSM382232Root_Hg1GSE15295Mercury toxicity in barley rootsLink to GEO
3.995.8GSM382233Root_Hg2GSE15295Mercury toxicity in barley rootsLink to GEO
3.695.3GSM311257hsp5_without_aphids_2GSE12584Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines Link to GEO
3.595.1GSM1611487% SWC rep3GSE6990Barley drought stressLink to GEO
3.494.8GSM16082319% SWC rep1GSE6990Barley drought stressLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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