Co-expression analysis

Gene ID HS08H05u_at
Gene name
Homology with ArabidopsisSimilar to At5g60460: sec61beta family protein (HF=2e-4)
Module size 7 genes
NF 0.46
%ile 64.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5369.70.95HS08H05u_atHS08H05u--2e-4At5g60460sec61beta family proteinO.I.H.G.S.X.
0.5369.70.96Contig14154_atContig14154--2e+0At1g60320Toll-Interleukin-Resistance (TIR) domain-containing proteinO.I.H.G.S.X.
0.5268.30.96Contig11372_atContig11372--5e-7At3g27100-O.I.H.G.S.X.
0.4356.40.96Contig6860_atContig6860--8e-4At5g66815unknown proteinO.I.H.G.S.X.
0.4255.20.95Contig167_x_atContig167--2e-8At1g08880H2AXAO.I.H.G.S.X.
0.3647.10.96Contig416_x_atContig416--5e-29At4g24190SHD (SHEPHERD)O.I.H.G.S.X.
0.3138.60.96Contig10954_atContig10954--4e+0At3g21175ZML1 (ZIM-LIKE 1)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
13.199.4GSM398264HS41-1_1d_rep1GSE15970Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley GenotypesLink to GEO
9.499.0GSM398265HS41-1_1d_rep2GSE15970Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley GenotypesLink to GEO
7.598.6GSM398261HS41-1_0d_rep1GSE15970Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley GenotypesLink to GEO
5.097.2GSM382234Root_Hg3GSE15295Mercury toxicity in barley rootsLink to GEO
4.396.4GSM398251Martin_0d_rep3GSE15970Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley GenotypesLink to GEO
4.196.2GSM382232Root_Hg1GSE15295Mercury toxicity in barley rootsLink to GEO
3.995.8GSM382233Root_Hg2GSE15295Mercury toxicity in barley rootsLink to GEO
3.695.3GSM311257hsp5_without_aphids_2GSE12584Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines Link to GEO
3.595.1GSM1611487% SWC rep3GSE6990Barley drought stressLink to GEO
3.494.8GSM16082319% SWC rep1GSE6990Barley drought stressLink to GEO

Inter-species module comparison

A co-expression module including the rice gene, Os12g0103300, orthologous to the query gene, HS08H05u_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.5371.3Os12g0103300At5g60460-Protein transport protein SEC61 beta subunit4e-3At5g60460sec61beta family proteinO.I.H.G.S.X.
0.5068.0Os09g0541500At5g60460-Longin-like domain containing protein3e-29At2g20930-O.I.H.G.S.X.
0.2727.5Os05g0474400At5g60460--6e-1At3g56110PRA1.B1 (PRENYLATED RAB ACCEPTOR 1.B1)O.I.H.G.S.X.
0.1712.6Os08g0248900At5g60460-ADP-ribosylation factor 32e-46At2g24765ARF3 (ADP-RIBOSYLATION FACTOR 3)O.I.H.G.S.X.
0.1712.6Os12g0207300At5g60460-Clathrin coat assembly protein AP17 (Clathrin coatassociated protein AP17) (Plasma membrane adaptor AP-2 17kDa protein) (HA2 17 kDa subunit) (Clathrin assemblyprotein 2 small chain)9e-55At1g47830clathrin coat assembly protein, putativeO.I.H.G.S.X.
0.116.5Os11g0181100At5g60460-Nonaspanin (TM9SF) family protein2e-70At1g10950endomembrane protein 70, putativeO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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