Co-expression analysis

Gene ID HS08H05u_at
Gene name
Homology with ArabidopsisSimilar to At5g60460: sec61beta family protein (HF=2e-4)
Module size 7 genes
NF 0.46
%ile 64.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5369.70.95HS08H05u_atHS08H05u--2e-4At5g60460sec61beta family proteinO.I.H.G.S.X.
0.5369.70.96Contig14154_atContig14154--2e+0At1g60320Toll-Interleukin-Resistance (TIR) domain-containing proteinO.I.H.G.S.X.
0.5268.30.96Contig11372_atContig11372--5e-7At3g27100-O.I.H.G.S.X.
0.4356.40.96Contig6860_atContig6860--8e-4At5g66815unknown proteinO.I.H.G.S.X.
0.4255.20.95Contig167_x_atContig167--2e-8At1g08880H2AXAO.I.H.G.S.X.
0.3647.10.96Contig416_x_atContig416--5e-29At4g24190SHD (SHEPHERD)O.I.H.G.S.X.
0.3138.60.96Contig10954_atContig10954--4e+0At3g21175ZML1 (ZIM-LIKE 1)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
13.199.4GSM398264HS41-1_1d_rep1GSE15970Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley GenotypesLink to GEO
9.499.0GSM398265HS41-1_1d_rep2GSE15970Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley GenotypesLink to GEO
7.598.6GSM398261HS41-1_0d_rep1GSE15970Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley GenotypesLink to GEO
5.097.2GSM382234Root_Hg3GSE15295Mercury toxicity in barley rootsLink to GEO
4.396.4GSM398251Martin_0d_rep3GSE15970Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley GenotypesLink to GEO
4.196.2GSM382232Root_Hg1GSE15295Mercury toxicity in barley rootsLink to GEO
3.995.8GSM382233Root_Hg2GSE15295Mercury toxicity in barley rootsLink to GEO
3.695.3GSM311257hsp5_without_aphids_2GSE12584Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines Link to GEO
3.595.1GSM1611487% SWC rep3GSE6990Barley drought stressLink to GEO
3.494.8GSM16082319% SWC rep1GSE6990Barley drought stressLink to GEO

Inter-species module comparison

A co-expression module including the soybean gene, Gma.5350.1.S1_s_at, orthologous to the query gene, HS08H05u_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.6181.8Gma.5350.1.S1_s_atAt5g60460--6e-18At5g60460sec61beta family proteinO.I.H.G.S.X.
0.6986.8Gma.2904.1.S1_atAt5g60460--1e-1At3g43520unknown proteinO.I.H.G.S.X.
0.6986.8GmaAffx.91136.1.S1_s_atAt5g60460--2e-36At5g19510elongation factor 1B alpha-subunit 2 (eEF1Balpha2)O.I.H.G.S.X.
0.6181.8Gma.7245.1.S1_atAt5g60460--3e-35At4g35490MRPL11 (MITOCHONDRIAL RIBOSOMAL PROTEIN L11)O.I.H.G.S.X.
0.6080.7Gma.18017.2.S1_s_atAt5g60460--6e-21At1g69620RPL34 (RIBOSOMAL PROTEIN L34)O.I.H.G.S.X.
0.5576.3GmaAffx.90455.1.A1_s_atAt5g60460--3e-26At5g12110elongation factor 1B alpha-subunit 1 (eEF1Balpha1)O.I.H.G.S.X.
0.5474.8GmaAffx.80265.1.S1_atAt5g60460--3e-31At1g17350auxin-induced-related / indole-3-acetic acid induced-relatedO.I.H.G.S.X.
0.4766.6Gma.11048.1.S1_atAt5g60460--2e-40At1g0969060S ribosomal protein L21 (RPL21C)O.I.H.G.S.X.
0.4665.5Gma.4710.1.S1_x_atAt5g60460--2e-21At5g1838040S ribosomal protein S16 (RPS16C)O.I.H.G.S.X.
0.4360.6Gma.11262.1.S1_atAt5g60460--2e-27At4g2623060S ribosomal protein L31 (RPL31B)O.I.H.G.S.X.
0.4057.1Gma.11262.1.S1_x_atAt5g60460--2e-27At4g2623060S ribosomal protein L31 (RPL31B)O.I.H.G.S.X.
0.3853.3GmaAffx.91182.1.S1_s_atAt5g60460--6e-83At5g0709040S ribosomal protein S4 (RPS4B)O.I.H.G.S.X.
0.3853.3Gma.1912.2.S1_a_atAt5g60460--5e-19At5g53400nuclear movement family proteinO.I.H.G.S.X.
0.3447.2Gma.11295.2.S1_x_atAt5g60460--2e-17At5g5667040S ribosomal protein S30 (RPS30C)O.I.H.G.S.X.
0.2939.0GmaAffx.91135.1.S1_s_atAt5g60460--4e-13At5g63510GAMMA CAL1 (GAMMA CARBONIC ANHYDRASE LIKE 1)O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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