Co-expression analysis

Gene ID	HS07H05u_s_at
Gene name
Homology with Arabidopsis	Similar to At2g29080: ftsh3 (FtsH protease 3) (HF=1e-6)
Module size	6 genes
NF	0.39
%ile	53.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.40	53.1	0.95	HS07H05u_s_at	HS07H05u	-	-	1e-6	At2g29080	ftsh3 (FtsH protease 3)	O.I.	H.G.	S.X.	Please select
0.61	78.7	0.95	Contig15357_at	Contig15357	-	-	3e-1	At1g24440	protein binding / zinc ion binding	O.I.	H.G.	S.X.	Please select
0.46	61.0	0.96	Contig5369_at	Contig5369	-	-	1e-1	At3g46150	unknown protein	O.I.	H.G.	S.X.	Please select
0.40	53.1	0.96	Contig17106_at	Contig17106	-	-	5e+0	At1g26890	-	O.I.	H.G.	S.X.	Please select
0.29	35.5	0.95	Contig18260_at	Contig18260	-	-	2e-15	At1g22150	SULTR1	O.I.	H.G.	S.X.	Please select
0.26	30.4	0.95	HS17M12u_s_at	HS17M12u	-	-	4e+0	At3g23250	MYB15 (MYB DOMAIN PROTEIN 15)	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
17.7	99.7	GSM282038	Malting_kilned_Morex_rep1	GSE11200	Expression data from malting barley seeds
14.0	99.5	GSM282040	Malting_kilned_Morex_rep2	GSE11200	Expression data from malting barley seeds
11.0	99.2	GSM238410	Pericarp 8DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
8.3	98.8	GSM282030	Malting_day4_Harrington_rep2	GSE11200	Expression data from malting barley seeds
6.2	98.0	GSM282033	Malting_day4_Harrington_rep4	GSE11200	Expression data from malting barley seeds
5.8	97.8	GSM238412	Endosperm 4DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.4	96.6	GSM372955	genotype: Mla6 - pathogen isolates: 5874 - time: 32 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
4.2	96.3	GSM238422	Endosperm 24 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.0	96.0	GSM372990	genotype: 11542 - pathogen isolates: 5874 - time: 32 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.7	95.5	GSM238413	Endosperm 4DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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