Co-expression analysis

Gene ID HS06P18u_at
Gene name
Homology with ArabidopsisSimilar to At3g22630: PBD1 (20S PROTEASOME BETA SUBUNIT D1) (HF=5e-1)
Module size 9 genes
NF 0.60
%ile 82.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.8494.30.95HS06P18u_atHS06P18u--5e-1At3g22630PBD1 (20S PROTEASOME BETA SUBUNIT D1)O.I.H.G.S.X.
0.7589.50.96S0001000057I10F1_atS0001000057I10F1--1e+1At3g06190BPM2 (BTB-POZ AND MATH DOMAIN 2)O.I.H.G.S.X.
0.7187.10.97HT06M11u_atHT06M11u--1e+1Atcg01310-O.I.H.G.S.X.
0.6380.30.96EBro08_SQ007_C12_atEBro08_SQ007_C12--9e-1At5g61270PIF7 (PHYTOCHROME-INTERACTING FACTOR7)O.I.H.G.S.X.
0.5774.90.96HVSMEl0006C17r2_x_atHVSMEl0006C17r2--1e+0At4g32090galactosyltransferaseO.I.H.G.S.X.
0.5268.30.96baal1j07_atbaal1j07--5e-15At4g3080040S ribosomal protein S11 (RPS11B)O.I.H.G.S.X.
0.4863.20.97HV_CEa0014H05r2_atHV_CEa0014H05r2--3e+0At5g64850unknown proteinO.I.H.G.S.X.
0.4356.40.97Contig10097_atContig10097--4e-1At3g16450jacalin lectin family proteinO.I.H.G.S.X.
0.3240.30.96Contig12986_atContig12986--7e-13At3g28007nodulin MtN3 family proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
8.898.9GSM282036Malting_steeped_Morex_rep2GSE11200Expression data from malting barley seedsLink to GEO
5.497.5GSM238414Endosperm 8DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.496.6GSM238434Embryo 24 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.296.3GSM238435Embryo 24 h; Seed germination; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.096.0GSM282040Malting_kilned_Morex_rep2GSE11200Expression data from malting barley seedsLink to GEO
3.895.7GSM238415Endosperm 8DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.695.3GSM238422Endosperm 24 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.494.8GSM372954genotype: Mla6 - pathogen isolates: 5874 - time: 32 - rep2GSE14930Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance geneLink to GEO
3.494.8GSM282033Malting_day4_Harrington_rep4GSE11200Expression data from malting barley seedsLink to GEO
3.394.6GSM238408Pericarp 4DAF; seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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