Co-expression analysis

Gene ID	HS05I23r_s_at
Gene name
Homology with Arabidopsis	Similar to At3g22435: XS domain-containing protein (HF=8e+0)
Module size	6 genes
NF	0.16
%ile	19.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.77	90.8	0.95	HS05I23r_s_at	HS05I23r	-	-	8e+0	At3g22435	XS domain-containing protein	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.95	Contig2747_x_at	Contig2747	-	-	3e-19	At1g08450	CRT3 (CALRETICULIN 3)	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.95	Contig5289_s_at	Contig5289	defender against death (dad) 2	-	9e-11	At2g35520	DAD2 (DEFENDER AGAINST CELL DEATH 2)	O.I.	H.G.	S.X.	Please select
0.09	7.4	0.95	Contig8748_at	Contig8748	-	-	5e+0	At2g16740	UBC29 (ubiquitin-conjugating enzyme 29)	O.I.	H.G.	S.X.	Please select
0.08	6.5	0.95	Contig7854_at	Contig7854	-	-	2e-4	At1g78700	brassinosteroid signalling positive regulator-related	O.I.	H.G.	S.X.	Please select
0.07	5.8	0.95	Contig4271_at	Contig4271	-	-	2e+0	At4g09440	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.7	96.9	GSM261038	Dicktoo-subzero-rep3	GSE10329	Low temperature stress in cv. Dicktoo
3.5	95.1	GSM238436	Embryo 48 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.3	94.6	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.3	94.6	GSM261068	Albina f-17 Control rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.2	94.3	GSM261036	Dicktoo-subzero-rep1	GSE10329	Low temperature stress in cv. Dicktoo
2.8	93.1	GSM238430	Embryo 25DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
2.8	93.1	GSM261071	Albina f-17 Hardened rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
2.7	92.7	GSM261073	Albina f-17 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
2.7	92.7	GSM261037	Dicktoo-subzero-rep2	GSE10329	Low temperature stress in cv. Dicktoo
2.6	92.3	GSM238438	Embryo 72 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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