Co-expression analysis

Gene ID HO10O22S_at
Gene name
Homology with ArabidopsisSimilar to At1g67090: RBCS1A (RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN 1A) (HF=3e-17)
Module size 7 genes
NF 0.10
%ile 13.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7589.50.80HO10O22S_atHO10O22S--3e-17At1g67090RBCS1A (RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN 1A)O.I.H.G.S.X.
0.2122.60.89HVSMEl0006F02r2_x_atHVSMEl0006F02r2--2e+0At3g17250protein phosphatase 2C-related / PP2C-relatedO.I.H.G.S.X.
0.1716.90.88Contig21716_atContig21716--1e+1At3g27270-O.I.H.G.S.X.
0.097.40.90Contig10803_atContig10803--1e-1At4g23890unknown proteinO.I.H.G.S.X.
0.097.40.87Contig12420_atContig12420--8e-25At1g64060ATRBOH F (ARABIDOPSIS THALIANA RESPIRATORY BURST OXIDASE PROTEIN F)O.I.H.G.S.X.
0.054.10.89Contig565_atContig565--4e-14At1g08110lactoylglutathione lyase, putative / glyoxalase I, putativeO.I.H.G.S.X.
0.032.60.84Contig16249_atContig16249--6e-4At3g61320unknown proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
31.299.9GSM261047after 3 days in mannitol medium rep3GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
30.899.9GSM238414Endosperm 8DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
24.399.8GSM261046after 3 days in mannitol medium rep2GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
15.199.5GSM238415Endosperm 8DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
8.698.8GSM238428Embryo 16DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
7.298.5GSM261054Bonus Hardened rep2GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
7.098.4GSM238410Pericarp 8DAF; seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
6.898.3GSM238429Embryo 16DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
6.698.2GSM238408Pericarp 4DAF; seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
6.598.2GSM261045after 3 days in mannitol medium rep1GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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