Co-expression analysis

Gene ID HO03I02S_at
Gene name
Homology with ArabidopsisSimilar to At5g37850: SOS4 (SALT OVERLY SENSITIVE 4) (HF=3e+0)
Module size 24 genes
NF 0.22
%ile 27.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9498.90.93HO03I02S_atHO03I02S--3e+0At5g37850SOS4 (SALT OVERLY SENSITIVE 4)O.I.H.G.S.X.
0.3950.50.94Contig9840_atContig9840--7e-4At5g64970mitochondrial substrate carrier family proteinO.I.H.G.S.X.
0.3443.60.95HVSMEk0004M15r2_atHVSMEk0004M15r2--3e-1At4g27940mitochondrial substrate carrier family proteinO.I.H.G.S.X.
0.3342.60.95Contig15154_atContig15154--6e-3At2g42700-O.I.H.G.S.X.
0.3240.30.95Contig21040_atContig21040--2e+0At5g12390FIS1B (FISSION 1B)O.I.H.G.S.X.
0.3138.60.96Contig16932_atContig16932--6e-1At3g17030-O.I.H.G.S.X.
0.2935.50.95Contig19489_atContig19489--1e+0At3g23171unknown proteinO.I.H.G.S.X.
0.2935.50.95Contig3707_atContig3707--1e-23At1g16180TMS membrane family protein / tumour differentially expressed (TDE) family proteinO.I.H.G.S.X.
0.2630.40.95Contig14608_atContig14608--4e-1At1g73990SPPAO.I.H.G.S.X.
0.2528.90.95Contig8323_atContig8323--3e+0Atmg00890-O.I.H.G.S.X.
0.2528.90.96Contig4760_s_atContig4760--1e+0At4g38700disease resistance-responsive family proteinO.I.H.G.S.X.
0.2528.90.95Contig9875_atContig9875--9e-3At3g29100VTI13O.I.H.G.S.X.
0.2427.20.95Contig8816_atContig8816--4e+0At5g14670ATARFA1B (ADP-ribosylation factor A1B)O.I.H.G.S.X.
0.2326.10.96Contig4873_s_atContig4873--4e+0At5g17847unknown proteinO.I.H.G.S.X.
0.2224.20.94Contig2670_x_atContig2670--5e-20At4g25820XTR9 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 9)O.I.H.G.S.X.
0.2122.60.95Contig8883_atContig8883--5e-5At2g04400indole-3-glycerol phosphate synthase (IGPS)O.I.H.G.S.X.
0.2021.10.95HA11D16u_s_atHA11D16u--2e+0At1g08520CHLDO.I.H.G.S.X.
0.2021.10.95Contig4475_atContig4475--1e-1At1g71840transducin family protein / WD-40 repeat family proteinO.I.H.G.S.X.
0.1716.90.95Contig18748_atContig18748--2e+0At5g63220unknown proteinO.I.H.G.S.X.
0.1412.90.94Contig11372_atContig11372--5e-7At3g27100-O.I.H.G.S.X.
0.1210.40.95Contig24881_s_atContig24881--5e-2At1g75340zinc finger (CCCH-type) family proteinO.I.H.G.S.X.
0.108.40.95Contig20823_s_atContig20823--3e-1At1g16730unknown proteinO.I.H.G.S.X.
0.097.40.96Contig3967_atContig3967--6e-16At5g47040LON2 (LON PROTEASE 2)O.I.H.G.S.X.
0.086.50.95Contig7152_atContig7152--2e-34At3g58600-O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.494.8GSM238428Embryo 16DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
2.993.4GSM238412Endosperm 4DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
2.591.9GSM282031Malting_day1_Harrington_rep1GSE11200Expression data from malting barley seedsLink to GEO
2.591.9GSM282037Malting_day1_Morex_rep2GSE11200Expression data from malting barley seedsLink to GEO
2.591.9GSM1611487% SWC rep3GSE6990Barley drought stressLink to GEO
2.491.4GSM1608317% SWC rep1GSE6990Barley drought stressLink to GEO
2.491.4GSM238438Embryo 72 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
2.491.4GSM238413Endosperm 4DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
2.290.3GSM16082238% SWC rep3GSE6990Barley drought stressLink to GEO
2.290.3GSM238434Embryo 24 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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