Co-expression analysis

Gene ID	HM11P04r_at
Gene name
Homology with Arabidopsis	Similar to At2g31600: unknown protein (HF=3e+0)
Module size	32 genes
NF	0.89
%ile	99.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.90	95.7	0.82	HM11P04r_at	HM11P04r	-	-	3e+0	At2g31600	unknown protein	O.I.	H.G.	S.X.	Please select
0.95	99.2	0.89	Contig21830_at	Contig21830	-	-	1e+0	At3g17660	AGD15 (ARF-GAP domain 15)	O.I.	H.G.	S.X.	Please select
0.94	98.9	0.88	Contig1675_s_at	Contig1675	-	-	7e+0	Atmg01090	-	O.I.	H.G.	S.X.	Please select
0.94	98.9	0.88	HB04I10r_at	HB04I10r	-	-	5e+0	At5g56230	PRA1.G2 (PRENYLATED RAB ACCEPTOR 1.G2)	O.I.	H.G.	S.X.	Please select
0.92	98.4	0.86	HD06J14r_at	HD06J14r	-	-	3e+1	At5g38790	unknown protein	O.I.	H.G.	S.X.	Please select
0.92	98.4	0.87	HM05O11r_at	HM05O11r	-	-	5e-1	At2g17540	unknown protein	O.I.	H.G.	S.X.	Please select
0.92	98.4	0.88	Contig25644_at	Contig25644	-	-	4e+0	At4g19003	VPS25	O.I.	H.G.	S.X.	Please select
0.92	98.4	0.87	HF14A04r_at	HF14A04r	-	-	2e+0	At5g22240	OFP10	O.I.	H.G.	S.X.	Please select
0.92	98.4	0.89	HZ01M13u_at	HZ01M13u	-	-	4e+0	At3g25730	AP2 domain-containing transcription factor, putative	O.I.	H.G.	S.X.	Please select
0.92	98.4	0.85	HD02I19r_at	HD02I19r	-	-	7e+0	At5g46490	disease resistance protein (TIR-NBS class), putative	O.I.	H.G.	S.X.	Please select
0.92	98.4	0.86	Contig2522_at	Contig2522	-	-	1e-93	At1g07770	RPS15A (ribosomal protein s15a)	O.I.	H.G.	S.X.	Please select
0.91	98.1	0.87	Contig11232_at	Contig11232	-	-	1e-4	At3g26790	FUS3 (FUSCA 3)	O.I.	H.G.	S.X.	Please select
0.90	95.7	0.84	Contig20692_at	Contig20692	-	-	7e+0	At5g57060	unknown protein	O.I.	H.G.	S.X.	Please select
0.90	95.7	0.84	EBma08_SQ002_F06_at	EBma08_SQ002_F06	-	-	9e-1	At3g43170	unknown protein	O.I.	H.G.	S.X.	Please select
0.89	95.4	0.85	EBem07_SQ004_I01_at	EBem07_SQ004_I01	-	-	4e+0	At2g31335	unknown protein	O.I.	H.G.	S.X.	Please select
0.89	95.4	0.87	EBma03_SQ002_D19_at	EBma03_SQ002_D19	-	-	1e+0	At5g57391	unknown protein	O.I.	H.G.	S.X.	Please select
0.88	95.2	0.83	HB14P07r_at	HB14P07r	-	-	6e+0	At5g17810	WOX12 (WUSCHEL related homeobox 12)	O.I.	H.G.	S.X.	Please select
0.88	95.2	0.86	HB25F09r_x_at	HB25F09r	-	-	6e+0	At4g36515	unknown protein	O.I.	H.G.	S.X.	Please select
0.88	95.2	0.86	HD04G09u_at	HD04G09u	-	-	1e+0	At2g46690	auxin-responsive family protein	O.I.	H.G.	S.X.	Please select
0.88	95.2	0.87	Contig23510_at	Contig23510	-	-	2e+0	At1g03260	-	O.I.	H.G.	S.X.	Please select
0.88	95.2	0.86	Contig24884_at	Contig24884	-	-	1e-1	At5g10140	FLC (FLOWERING LOCUS C)	O.I.	H.G.	S.X.	Please select
0.87	95.0	0.84	HD08L09r_at	HD08L09r	-	-	4e+0	At2g40085	unknown protein	O.I.	H.G.	S.X.	Please select
0.87	95.0	0.85	Contig12012_at	Contig12012	-	-	1e+0	At1g31040	unknown protein	O.I.	H.G.	S.X.	Please select
0.87	95.0	0.85	HB11D23r_x_at	HB11D23r	-	-	2e+0	At2g14110	-	O.I.	H.G.	S.X.	Please select
0.87	95.0	0.85	HM11M18r_at	HM11M18r	-	-	9e-1	At2g27160	unknown protein	O.I.	H.G.	S.X.	Please select
0.87	95.0	0.85	HF09N12r_at	HF09N12r	-	-	1e-1	At5g39330	unknown protein	O.I.	H.G.	S.X.	Please select
0.87	95.0	0.86	HB04I10r_x_at	HB04I10r	-	-	5e+0	At5g56230	PRA1.G2 (PRENYLATED RAB ACCEPTOR 1.G2)	O.I.	H.G.	S.X.	Please select
0.87	95.0	0.82	HF13L09r_at	HF13L09r	-	-	3e+0	At4g10430	-	O.I.	H.G.	S.X.	Please select
0.87	95.0	0.87	Contig204_s_at	Contig204	-	-	5e-43	At1g09200	histone H3	O.I.	H.G.	S.X.	Please select
0.77	90.8	0.82	HB01M09r_at	HB01M09r	-	-	3e-1	At3g22070	proline-rich family protein	O.I.	H.G.	S.X.	Please select
0.74	89.1	0.85	HF13N11r_x_at	HF13N11r	-	-	2e+0	At5g10260	AtRABH1e (Arabidopsis Rab GTPase homolog H1e)	O.I.	H.G.	S.X.	Please select
0.70	86.0	0.85	Contig17965_at	Contig17965	-	-	2e-17	At3g15352	ATCOX17	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
8.8	98.9	GSM261047	after 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
8.3	98.8	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
7.5	98.6	GSM261046	after 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
6.7	98.3	GSM261053	Bonus Hardened rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
6.2	98.0	GSM261054	Bonus Hardened rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
5.1	97.3	GSM238427	Endosperm 72 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
4.9	97.1	GSM238426	Endosperm 72 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.5	96.7	GSM238423	Endosperm 24 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
4.5	96.7	GSM238422	Endosperm 24 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.5	96.7	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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