Co-expression analysis

Gene ID HM06F24r_at
Gene name
Homology with ArabidopsisSimilar to At4g33020: ZIP9 (HF=1e+0)
Module size 6 genes
NF 0.70
%ile 91.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.10.99HM06F24r_atHM06F24r--1e+0At4g33020ZIP9O.I.H.G.S.X.
0.9198.10.99HVSMEk0004A21r2_atHVSMEk0004A21r2--7e-2At2g16300F-box family proteinO.I.H.G.S.X.
0.7388.70.99Contig12932_atContig12932--3e-2At4g33985unknown proteinO.I.H.G.S.X.
0.6380.30.99Contig21713_atContig21713--1e+0At3g06050PRXIIF (PEROXIREDOXIN IIF)O.I.H.G.S.X.
0.4661.00.99Contig949_atContig949--8e-28At1g29910CAB3 (CHLOROPHYLL A/B BINDING PROTEIN 3)O.I.H.G.S.X.
0.4458.91.00EBpi01_SQ002_G19_atEBpi01_SQ002_G19--2e+0At3g16440ATMLP-300B (MYROSINASE-BINDING PROTEIN-LIKE PROTEIN-300B)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
18.299.7GSM71157Steptoe stress and unstress replicate 1GSE3170 Barley single feature polymorphisms and drought stress gene expressionLink to GEO
13.599.5GSM71158Steptoe stress and unstress replicate 2GSE3170 Barley single feature polymorphisms and drought stress gene expressionLink to GEO
8.898.9GSM238411Pericarp 8DAF; seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
8.398.8GSM238438Embryo 72 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
7.898.6GSM238410Pericarp 8DAF; seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
5.897.8GSM238408Pericarp 4DAF; seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
5.897.8GSM238426Endosperm 72 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
5.297.4GSM238409Pericarp 4DAF; seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.796.9GSM238429Embryo 16DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.596.7GSM282031Malting_day1_Harrington_rep1GSE11200Expression data from malting barley seedsLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



Back to the CoP portal site

Back to the KAGIANA project homepage