Co-expression analysis

Gene ID HM04D16u_s_at
Gene name
Homology with ArabidopsisSimilar to At5g10400: histone H3 (HF=3e+0)
Module size 7 genes
NF 0.42
%ile 58.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5369.70.93HM04D16u_s_atHM04D16u--3e+0At5g10400histone H3O.I.H.G.S.X.
0.6784.70.95Contig7205_atContig7205--2e-2At2g32550rcd1-like cell differentiation family proteinO.I.H.G.S.X.
0.4762.20.95Contig3334_atContig3334--2e-53At3g53610ATRAB8O.I.H.G.S.X.
0.4458.90.99Contig3332_atContig3332--2e-1At3g21215RNA-binding protein, putativeO.I.H.G.S.X.
0.4053.10.99Contig3337_atContig3337--5e-50At5g59840Ras-related GTP-binding family proteinO.I.H.G.S.X.
0.2935.50.95Contig12140_atContig12140--4e+0At5g54440unknown proteinO.I.H.G.S.X.
0.2732.10.95Contig5749_atContig5749--6e-16At2g25310carbohydrate bindingO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.296.3GSM238431Embryo 25DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.096.0GSM238434Embryo 24 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.995.8GSM238430Embryo 25DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.995.8GSM238414Endosperm 8DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.494.8GSM238436Embryo 48 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.394.6GSM238432Embryo 0 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.294.3GSM238410Pericarp 8DAF; seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.194.1GSM238438Embryo 72 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.093.8GSM238435Embryo 24 h; Seed germination; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
2.893.1GSM238408Pericarp 4DAF; seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO

Inter-species module comparison

A co-expression module including the rice gene, Os09g0512800, orthologous to the query gene, HM04D16u_s_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.6787.2Os09g0512800At5g10400-Conserved hypothetical protein2e-1At2g21510DNAJ heat shock N-terminal domain-containing proteinO.I.H.G.S.X.
0.3644.0Os03g0340700At5g10400-TPR-like domain containing protein2e-1At3g16760tetratricopeptide repeat (TPR)-containing proteinO.I.H.G.S.X.
0.2625.6Os08g0442300At5g10400-Calcineurin-like protein2e-3At3g18430calcium-binding EF hand family proteinO.I.H.G.S.X.
0.2219.4Os01g0229200At5g10400-VHS domain containing protein1e-6At4g32760protein transporterO.I.H.G.S.X.
0.1915.1Os01g0164700At5g10400-Hypothetical protein3e-1At5g63220unknown proteinO.I.H.G.S.X.
0.138.2Os01g0321700At5g10400-Sec23/Sec24 zinc finger domain containing protein2e-3At4g01810protein transport protein-relatedO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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