Co-expression analysis

Gene ID	HM02C20u_at
Gene name
Homology with Arabidopsis	Similar to At5g48920: TED7 (TRACHEARY ELEMENT DIFFERENTIATION-RELATED 7) (HF=1e+0)
Module size	6 genes
NF	0.32
%ile	42.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.71	87.1	0.78	HM02C20u_at	HM02C20u	-	-	1e+0	At5g48920	TED7 (TRACHEARY ELEMENT DIFFERENTIATION-RELATED 7)	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.87	HVSMEf0014C12r2_s_at	HVSMEf0014C12r2	-	-	1e+1	At5g03840	TFL1 (TERMINAL FLOWER 1)	O.I.	H.G.	S.X.	Please select
0.40	53.1	0.88	Contig4579_s_at	Contig4579	-	-	2e-9	At5g21150	PAZ domain-containing protein / piwi domain-containing protein	O.I.	H.G.	S.X.	Please select
0.36	47.1	0.84	HVSMEf0011J16r2_at	HVSMEf0011J16r2	-	-	1e+0	At1g58100	TCP family transcription factor, putative	O.I.	H.G.	S.X.	Please select
0.15	14.1	0.84	HVSMEm0001B03r2_at	HVSMEm0001B03r2	-	-	7e-2	At3g42150	unknown protein	O.I.	H.G.	S.X.	Please select
0.13	11.6	0.87	HW06C04u_x_at	HW06C04u	-	-	7e+0	At3g05980	unknown protein	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
11.9	99.3	GSM261044	before 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
9.7	99.0	GSM261043	before 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
8.3	98.8	GSM261042	before 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
4.6	96.8	GSM261021	ABA-Control-rep1	GSE10328	ABA experiment
4.4	96.6	GSM282036	Malting_steeped_Morex_rep2	GSE11200	Expression data from malting barley seeds
4.1	96.2	GSM261022	ABA-Control-rep2	GSE10328	ABA experiment
3.1	94.1	GSM282031	Malting_day1_Harrington_rep1	GSE11200	Expression data from malting barley seeds
2.6	92.3	GSM372981	genotype: 11542 - pathogen isolates: 5874 - time: 16 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
2.5	91.9	GSM261032	Dicktoo control-rep3	GSE10329	Low temperature stress in cv. Dicktoo
2.5	91.9	GSM282033	Malting_day4_Harrington_rep4	GSE11200	Expression data from malting barley seeds

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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