Co-expression analysis

Gene ID	HM01F24T_s_at
Gene name
Homology with Arabidopsis	Similar to At2g33370: 60S ribosomal protein L23 (RPL23B) (HF=4e-5)
Module size	7 genes
NF	0.76
%ile	95.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.75	89.5	0.98	HM01F24T_s_at	HM01F24T	-	-	4e-5	At2g33370	60S ribosomal protein L23 (RPL23B)	O.I.	H.G.	S.X.	Please select
0.86	94.8	0.98	Contig10241_at	Contig10241	-	-	2e-9	At1g29120	unknown protein	O.I.	H.G.	S.X.	Please select
0.83	94.0	0.98	Contig23530_s_at	Contig23530	-	-	8e+0	At3g57072	unknown protein	O.I.	H.G.	S.X.	Please select
0.77	90.8	0.99	Contig20949_at	Contig20949	-	-	2e+0	At4g34150	C2 domain-containing protein	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.98	Contig14763_at	Contig14763	-	-	2e-1	At2g37510	RNA-binding protein, putative	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.99	HY09M22u_s_at	HY09M22u	-	-	3e+0	At2g04378	beta-galactosidase	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.98	Contig19492_at	Contig19492	-	-	5e-1	At5g41340	UBC4 (UBIQUITIN CONJUGATING ENZYME 4)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
40.0	99.9	GSM261046	after 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
19.6	99.7	GSM261042	before 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
12.5	99.4	GSM311255	hsp5_with_aphids_3	GSE12584	Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
11.0	99.2	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
10.2	99.1	GSM261047	after 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
8.9	98.9	GSM311254	hsp5_with_aphids_2	GSE12584	Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
8.7	98.9	GSM311256	hsp5_without_aphids_1	GSE12584	Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
8.7	98.9	GSM311257	hsp5_without_aphids_2	GSE12584	Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
8.5	98.8	GSM282033	Malting_day4_Harrington_rep4	GSE11200	Expression data from malting barley seeds
8.5	98.8	GSM311253	hsp5_with_aphids_1	GSE12584	Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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