Co-expression analysis

Gene ID HK05N20r_at
Gene name
Homology with ArabidopsisSimilar to Atcg00790: - (HF=3e+0)
Module size 7 genes
NF 0.59
%ile 81.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6784.70.91HK05N20r_atHK05N20r--3e+0Atcg00790-O.I.H.G.S.X.
0.5975.80.92HVSMEc0011A22r2_atHVSMEc0011A22r2--1e+0At2g41920protein kinase family proteinO.I.H.G.S.X.
0.5975.80.92HVSMEc0013C11r2_atHVSMEc0013C11r2--7e-2At2g05600-O.I.H.G.S.X.
0.5774.90.92HVSMEc0010O09r2_atHVSMEc0010O09r2--1e+0At5g28630glycine-rich proteinO.I.H.G.S.X.
0.5572.00.92Contig10750_atContig10750--1e-4At1g51600TIFY2AO.I.H.G.S.X.
0.4458.90.94Contig22141_atContig22141--3e+0At3g07440unknown proteinO.I.H.G.S.X.
0.4255.20.93Contig15729_atContig15729--3e-2At3g11280myb family transcription factorO.I.H.G.S.X.

VF%ileCCGene IDRepr. IDGene nameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.6784.70.89Contig22740_atContig22740--6e-4At1g16110WAKL6 (wall associated kinase-like 6)O.I.H.G.S.X.
0.6077.30.93Contig13923_atContig13923--1e+0At3g61172LCR8 (Low-molecular-weight cysteine-rich 8)O.I.H.G.S.X.
0.5572.00.92Contig15050_atContig15050--2e+0At3g44950glycine-rich proteinO.I.H.G.S.X.
0.5572.00.92HVSMEf0004A21r2_atHVSMEf0004A21r2--2e-1At2g14045unknown proteinO.I.H.G.S.X.
0.5066.90.87HVSMEa0004N20r2_atHVSMEa0004N20r2--1e+0At4g22115SCRL14 (SCR-Like 14)O.I.H.G.S.X.
0.5066.90.91Contig8493_atContig8493--3e-5At1g64640plastocyanin-like domain-containing proteinO.I.H.G.S.X.
0.4863.20.85HW01L24u_atHW01L24u--3e+0At2g35820unknown proteinO.I.H.G.S.X.
0.4863.20.91Contig6845_atContig6845--2e+0At4g33350chloroplast inner membrane import protein Tic22, putativeO.I.H.G.S.X.
0.4661.00.88Contig19305_atContig19305--3e-1At5g16390CAC1 (CHLOROPLASTIC ACETYLCOENZYME A CARBOXYLASE 1)O.I.H.G.S.X.
0.4661.00.90Contig15719_atContig15719--4e-1At5g10930CIPK5 (CBL-INTERACTING PROTEIN KINASE 5)O.I.H.G.S.X.
0.4661.00.92Contig25750_atContig25750--4e+0At5g07880SNAP29O.I.H.G.S.X.
0.4053.10.91Contig17671_atContig17671--2e+0At4g33130-O.I.H.G.S.X.
0.3747.90.88Contig9747_atContig9747--4e-11At5g13120peptidyl-prolyl cis-trans isomerase cyclophilin-type family proteinO.I.H.G.S.X.
0.3647.10.88Contig2405_atContig2405--2e+0At5g57980RPB5C (RNA POLYMERASE II FIFTH LARGEST SUBUNIT, C)O.I.H.G.S.X.
0.3647.10.91Contig25029_atContig25029--4e+0At3g48231LCR48 (Low-molecular-weight cysteine-rich 48)O.I.H.G.S.X.
0.3545.10.92Contig15143_atContig15143--4e-4At2g28680cupin family proteinO.I.H.G.S.X.
0.3342.60.89Contig374_atContig374--1e-8At3g56350superoxide dismutase (Mn), putative / manganese superoxide dismutase, putativeO.I.H.G.S.X.
0.3342.60.90Contig8522_atContig8522--2e-3At5g27730unknown proteinO.I.H.G.S.X.
0.3342.60.90Contig981_s_atContig981--7e-18At2g34420LHB1B2O.I.H.G.S.X.
0.3240.30.90Contig19696_atContig19696--2e+0At4g23410TET5 (TETRASPANIN5)O.I.H.G.S.X.
0.3240.30.88Contig1953_s_atContig1953--3e-12At2g13360AGT (ALANINE:GLYOXYLATE AMINOTRANSFERASE)O.I.H.G.S.X.
0.3138.60.85Contig8357_atContig8357--5e-1At5g14410unknown proteinO.I.H.G.S.X.
0.2935.50.85Contig1164_atContig1164--3e-10At3g53650histone H2B, putativeO.I.H.G.S.X.
0.2835.50.85Contig18074_atContig18074--7e+0At5g53380unknown proteinO.I.H.G.S.X.
0.2732.10.87Contig20294_atContig20294--8e-2At1g77210sugar transporter, putativeO.I.H.G.S.X.
0.2732.10.90Contig14827_s_atContig14827--3e-1At5g17050UGT78D2 (UDP-GLUCOSYL TRANSFERASE 78D2)O.I.H.G.S.X.
0.2732.10.90Contig1411_s_atContig1411--6e-5At4g15210BAM5 (BETA-AMYLASE 5)O.I.H.G.S.X.
0.2630.40.89EBro02_SQ007_A14_atEBro02_SQ007_A14--7e-1At1g03960calcium-binding EF hand family proteinO.I.H.G.S.X.
0.2528.90.85Contig25674_atContig25674--8e+0At5g01440insulin-degrading enzyme-relatedO.I.H.G.S.X.
0.2528.90.92HVSMEf0020M03r2_atHVSMEf0020M03r2--4e+0At1g76980-O.I.H.G.S.X.


Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
13.199.4GSM238410Pericarp 8DAF; seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
11.999.3GSM238411Pericarp 8DAF; seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
8.698.8GSM431548pathogen isolates: Mock - rep3GSE17238Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminisLink to GEO
7.098.4GSM261070Albina f-17 Control rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
6.698.2GSM238408Pericarp 4DAF; seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
6.398.1GSM261045after 3 days in mannitol medium rep1GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
5.197.3GSM431569pathogen isolates: Mock inoculated control - rep2GSE17240Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betaeLink to GEO
5.097.2GSM431551pathogen isolates: Polymyxa graminis - rep3GSE17238Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminisLink to GEO
4.897.0GSM431572pathogen isolates: Polymyxa betae - rep2GSE17240Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betaeLink to GEO
4.596.7GSM261076Albina e-16 Control rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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