Co-expression analysis

Gene ID HK05N20r_at
Gene name
Homology with ArabidopsisSimilar to Atcg00790: - (HF=3e+0)
Module size 7 genes
NF 0.59
%ile 81.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6784.70.91HK05N20r_atHK05N20r--3e+0Atcg00790-O.I.H.G.S.X.
0.5975.80.92HVSMEc0011A22r2_atHVSMEc0011A22r2--1e+0At2g41920protein kinase family proteinO.I.H.G.S.X.
0.5975.80.92HVSMEc0013C11r2_atHVSMEc0013C11r2--7e-2At2g05600-O.I.H.G.S.X.
0.5774.90.92HVSMEc0010O09r2_atHVSMEc0010O09r2--1e+0At5g28630glycine-rich proteinO.I.H.G.S.X.
0.5572.00.92Contig10750_atContig10750--1e-4At1g51600TIFY2AO.I.H.G.S.X.
0.4458.90.94Contig22141_atContig22141--3e+0At3g07440unknown proteinO.I.H.G.S.X.
0.4255.20.93Contig15729_atContig15729--3e-2At3g11280myb family transcription factorO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
13.199.4GSM238410Pericarp 8DAF; seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
11.999.3GSM238411Pericarp 8DAF; seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
8.698.8GSM431548pathogen isolates: Mock - rep3GSE17238Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminisLink to GEO
7.098.4GSM261070Albina f-17 Control rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
6.698.2GSM238408Pericarp 4DAF; seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
6.398.1GSM261045after 3 days in mannitol medium rep1GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
5.197.3GSM431569pathogen isolates: Mock inoculated control - rep2GSE17240Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betaeLink to GEO
5.097.2GSM431551pathogen isolates: Polymyxa graminis - rep3GSE17238Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminisLink to GEO
4.897.0GSM431572pathogen isolates: Polymyxa betae - rep2GSE17240Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betaeLink to GEO
4.596.7GSM261076Albina e-16 Control rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO

Inter-species module comparison

A co-expression module including the grape gene, 1620835_at, orthologous to the query gene, HK05N20r_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.9499.31620835_atAtcg00790--6e-1At3g45443unknown proteinO.I.H.G.S.X.
0.6183.21620024_s_atAtcg00790hypothetical protein LOC100245587-4e-9At1g45230defective chloroplasts and leaves protein-related / DCL protein-relatedO.I.H.G.S.X.
0.5475.71610544_s_atAtcg00790hypothetical protein LOC100246662-1e-25At4g01150unknown proteinO.I.H.G.S.X.
0.5273.91613691_s_atAtcg00790hypothetical protein LOC100254533-5e-35At2g05100LHCB2.1O.I.H.G.S.X.
0.5072.71609993_atAtcg00790hypothetical protein LOC100267329-1e-3At3g55040GSTL2O.I.H.G.S.X.
0.4666.51615706_atAtcg00790hypothetical protein LOC100257450-1e-4At1g44920unknown proteinO.I.H.G.S.X.
0.4361.51620011_atAtcg00790O-acetylserine(thiol)-lyase-9e-27At3g59760OASC (O-ACETYLSERINE (THIOL) LYASE ISOFORM C)O.I.H.G.S.X.
0.4158.71609160_atAtcg00790hypothetical protein LOC100257877-2e-28At5g47110lil3 protein, putativeO.I.H.G.S.X.
0.4057.71613646_atAtcg00790hypothetical protein LOC100244073-1e-16At1g50170ATSIRB (ARABIDOPSIS THALIANA SIROHYDROCHLORIN FERROCHELATASE B)O.I.H.G.S.X.
0.4057.71618798_s_atAtcg00790hypothetical protein LOC100243733-2e-20At3g10670ATNAP7O.I.H.G.S.X.
0.3853.61607276_atAtcg00790--1e-13At3g23400plastid-lipid associated protein PAP / fibrillin family proteinO.I.H.G.S.X.
0.3548.51614320_s_atAtcg00790similar to MAP1D (METHIONINE AMINOPEPTIDASE 1D); metalloexopeptidase-2e-33At4g37040MAP1D (METHIONINE AMINOPEPTIDASE 1D)O.I.H.G.S.X.
0.3446.81615340_atAtcg00790similar to A_IG002N01.31 gene product-1e-30At4g01050hydroxyproline-rich glycoprotein family proteinO.I.H.G.S.X.
0.3345.71620553_atAtcg00790hypothetical protein LOC100265994-4e-28At3g58140phenylalanyl-tRNA synthetase class IIc family proteinO.I.H.G.S.X.
0.3243.11620973_s_atAtcg00790hypothetical protein LOC100265749-4e+0At3g22415unknown proteinO.I.H.G.S.X.
0.3039.41611733_s_atAtcg00790hypothetical protein LOC100240928-2e-12At1g03130PSAD-2 (photosystem I subunit D-2)O.I.H.G.S.X.
0.2937.71614231_s_atAtcg00790hypothetical protein LOC100245250-3e-5At3g15360TRX-M4 (ARABIDOPSIS THIOREDOXIN M-TYPE 4)O.I.H.G.S.X.
0.2428.71617646_atAtcg00790hypothetical protein LOC100261565-4e-26At5g16400ATF2O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays



Back to the CoP portal site

Back to the KAGIANA project homepage