Co-expression analysis

Gene ID	HK05N20r_at
Gene name
Homology with Arabidopsis	Similar to Atcg00790: - (HF=3e+0)
Module size	7 genes
NF	0.59
%ile	81.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	84.7	0.91	HK05N20r_at	HK05N20r	-	-	3e+0	Atcg00790	-	O.I.	H.G.	S.X.	Please select
0.59	75.8	0.92	HVSMEc0011A22r2_at	HVSMEc0011A22r2	-	-	1e+0	At2g41920	protein kinase family protein	O.I.	H.G.	S.X.	Please select
0.59	75.8	0.92	HVSMEc0013C11r2_at	HVSMEc0013C11r2	-	-	7e-2	At2g05600	-	O.I.	H.G.	S.X.	Please select
0.57	74.9	0.92	HVSMEc0010O09r2_at	HVSMEc0010O09r2	-	-	1e+0	At5g28630	glycine-rich protein	O.I.	H.G.	S.X.	Please select
0.55	72.0	0.92	Contig10750_at	Contig10750	-	-	1e-4	At1g51600	TIFY2A	O.I.	H.G.	S.X.	Please select
0.44	58.9	0.94	Contig22141_at	Contig22141	-	-	3e+0	At3g07440	unknown protein	O.I.	H.G.	S.X.	Please select
0.42	55.2	0.93	Contig15729_at	Contig15729	-	-	3e-2	At3g11280	myb family transcription factor	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
13.1	99.4	GSM238410	Pericarp 8DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
11.9	99.3	GSM238411	Pericarp 8DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
8.6	98.8	GSM431548	pathogen isolates: Mock - rep3	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
7.0	98.4	GSM261070	Albina f-17 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
6.6	98.2	GSM238408	Pericarp 4DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
6.3	98.1	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
5.1	97.3	GSM431569	pathogen isolates: Mock inoculated control - rep2	GSE17240	Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
5.0	97.2	GSM431551	pathogen isolates: Polymyxa graminis - rep3	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
4.8	97.0	GSM431572	pathogen isolates: Polymyxa betae - rep2	GSE17240	Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
4.5	96.7	GSM261076	Albina e-16 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1

Inter-species module comparison

A co-expression module including the soybean gene, GmaAffx.59620.1.S1_at, orthologous to the query gene, HK05N20r_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.90	93.7	GmaAffx.59620.1.S1_at	Atcg00790	-	-	8e-1	At5g16920	-	O.I.	H.G.	S.X.	Please select
0.46	65.5	GmaAffx.51885.1.S1_at	Atcg00790	-	-	3e+0	At5g27247	unknown protein	O.I.	H.G.	S.X.	Please select
0.39	54.5	Gma.2347.2.S1_at	Atcg00790	-	-	5e-44	At3g20770	EIN3 (ETHYLENE-INSENSITIVE3)	O.I.	H.G.	S.X.	Please select
0.35	48.6	GmaAffx.64326.1.S1_at	Atcg00790	-	-	8e-1	At2g17845	short-chain dehydrogenase/reductase (SDR) family protein	O.I.	H.G.	S.X.	Please select
0.34	47.2	GmaAffx.52184.1.S1_at	Atcg00790	-	-	3e-7	At2g37840	protein kinase family protein	O.I.	H.G.	S.X.	Please select
0.31	42.2	GmaAffx.81613.1.S1_at	Atcg00790	-	-	2e-11	At4g38470	protein kinase family protein	O.I.	H.G.	S.X.	Please select
0.31	42.2	GmaAffx.5115.1.S1_at	Atcg00790	-	-	4e-27	At3g23540	-	O.I.	H.G.	S.X.	Please select
0.30	40.4	GmaAffx.80588.1.S1_at	Atcg00790	-	-	3e-1	At3g15730	PLDALPHA1 (PHOSPHOLIPASE D ALPHA 1)	O.I.	H.G.	S.X.	Please select
0.28	39.0	GmaAffx.45252.2.S1_at	Atcg00790	-	-	3e-10	At3g14050	RSH2 (RELA-SPOT HOMOLOG 2)	O.I.	H.G.	S.X.	Please select
0.25	32.6	GmaAffx.25651.1.A1_at	Atcg00790	-	-	1e-8	At4g32850	nPAP (NUCLEAR POLY(A) POLYMERASE)	O.I.	H.G.	S.X.	Please select
0.25	32.6	Gma.4305.3.S1_a_at	Atcg00790	-	-	5e-8	At5g57940	ATCNGC5 (CYCLIC NUCLEOTIDE GATED CHANNEL 5)	O.I.	H.G.	S.X.	Please select
0.24	30.9	GmaAffx.38761.1.S1_at	Atcg00790	-	-	2e-17	At1g54490	XRN4 (EXORIBONUCLEASE 4)	O.I.	H.G.	S.X.	Please select
0.20	25.1	GmaAffx.4382.3.S1_at	Atcg00790	-	-	9e-18	At1g18470	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.20	25.1	GmaAffx.75287.1.S1_at	Atcg00790	-	-	2e-1	At4g01000	ubiquitin family protein	O.I.	H.G.	S.X.	Please select
0.20	25.1	GmaAffx.11850.2.S1_at	Atcg00790	-	-	8e-18	At4g32850	nPAP (NUCLEAR POLY(A) POLYMERASE)	O.I.	H.G.	S.X.	Please select
0.19	23.7	GmaAffx.68900.1.S1_at	Atcg00790	-	-	1e+0	At2g30760	unknown protein	O.I.	H.G.	S.X.	Please select
0.18	22.3	Gma.5237.2.S1_at	Atcg00790	-	-	5e-6	At3g55960	NLI interacting factor (NIF) family protein	O.I.	H.G.	S.X.	Please select
0.18	22.3	GmaAffx.88272.3.S1_at	Atcg00790	-	-	1e-41	At4g19110	protein kinase, putative	O.I.	H.G.	S.X.	Please select
0.17	21.2	GmaAffx.92886.1.S1_at	Atcg00790	-	-	3e-41	At5g09900	EMB2107 (EMBRYO DEFECTIVE 2107)	O.I.	H.G.	S.X.	Please select
0.17	21.2	GmaAffx.42058.1.S1_at	Atcg00790	-	-	3e-13	At1g61040	VIP5 (vernalization independence 5)	O.I.	H.G.	S.X.	Please select
0.16	19.7	GmaAffx.90162.1.S1_s_at	Atcg00790	-	-	2e-11	At2g28840	ankyrin repeat family protein	O.I.	H.G.	S.X.	Please select
0.16	19.7	GmaAffx.56265.1.S1_at	Atcg00790	-	-	1e-7	At5g19400	SMG7	O.I.	H.G.	S.X.	Please select
0.15	18.7	Gma.6034.2.S1_at	Atcg00790	-	-	2e-63	At3g19420	ATPEN2 (ARABIDOPSIS THALIANA PTEN 2)	O.I.	H.G.	S.X.	Please select
0.13	16.3	Gma.6196.2.S1_a_at	Atcg00790	-	-	2e-35	At2g14120	dynamin-like protein 2b (ADL2b)	O.I.	H.G.	S.X.	Please select
0.12	15.1	GmaAffx.65140.1.S1_at	Atcg00790	-	-	7e-2	At4g33670	L-galactose dehydrogenase (L-GalDH)	O.I.	H.G.	S.X.	Please select
0.12	15.1	GmaAffx.66282.1.S1_at	Atcg00790	-	-	9e-1	At5g15240	amino acid transporter family protein	O.I.	H.G.	S.X.	Please select
0.11	14.2	Gma.4166.1.S1_s_at	Atcg00790	-	-	2e-5	At3g12740	ALIS1 (ALA-INTERACTING SUBUNIT 1)	O.I.	H.G.	S.X.	Please select
0.09	12.0	GmaAffx.14185.1.S1_at	Atcg00790	-	-	7e-23	At1g25682	cell cycle control protein-related	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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