Co-expression analysis

Gene ID	HI04D10u_at
Gene name
Homology with Arabidopsis	Similar to At5g02960: 40S ribosomal protein S23 (RPS23B) (HF=7e-42)
Module size	19 genes
NF	0.27
%ile	33.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.64	80.9	0.88	HI04D10u_at	HI04D10u	-	-	7e-42	At5g02960	40S ribosomal protein S23 (RPS23B)	O.I.	H.G.	S.X.	Please select
0.63	80.3	0.91	Contig6594_at	Contig6594	-	-	2e-15	At2g03890	phosphatidylinositol 3- and 4-kinase family protein	O.I.	H.G.	S.X.	Please select
0.35	45.1	0.93	Contig19752_at	Contig19752	-	-	1e+0	At2g01340	unknown protein	O.I.	H.G.	S.X.	Please select
0.35	45.1	0.93	Contig6797_at	Contig6797	-	-	7e+0	At4g19980	unknown protein	O.I.	H.G.	S.X.	Please select
0.33	42.6	0.93	Contig13606_s_at	Contig13606	-	-	8e-1	At1g15710	prephenate dehydrogenase family protein	O.I.	H.G.	S.X.	Please select
0.32	40.3	0.94	Contig20140_at	Contig20140	-	-	2e-1	At5g12310	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.31	38.6	0.93	Contig19545_at	Contig19545	-	-	4e-2	At5g53260	seed maturation family protein	O.I.	H.G.	S.X.	Please select
0.30	37.0	0.93	Contig2594_s_at	Contig2594	-	-	4e-42	At5g10860	CBS domain-containing protein	O.I.	H.G.	S.X.	Please select
0.29	35.5	0.93	Contig8657_at	Contig8657	-	-	7e-10	At5g58740	nuclear movement family protein	O.I.	H.G.	S.X.	Please select
0.22	24.2	0.93	Contig1697_s_at	Contig1697	-	-	1e-6	At5g46430	60S ribosomal protein L32 (RPL32B)	O.I.	H.G.	S.X.	Please select
0.22	24.2	0.93	Contig9331_s_at	Contig9331	-	-	2e-2	At5g41190	-	O.I.	H.G.	S.X.	Please select
0.22	24.2	0.95	Contig10225_s_at	Contig10225	-	-	4e+0	At5g09490	40S ribosomal protein S15 (RPS15B)	O.I.	H.G.	S.X.	Please select
0.19	19.6	0.92	Contig12520_at	Contig12520	-	-	4e-1	At5g61880	signaling molecule-related	O.I.	H.G.	S.X.	Please select
0.17	16.9	0.94	HV_CEb0022F16r2_at	HV_CEb0022F16r2	-	-	5e+0	At3g42130	glycine-rich protein	O.I.	H.G.	S.X.	Please select
0.17	16.9	0.94	Contig14769_at	Contig14769	-	-	8e-1	At3g21830	ASK8 (ARABIDOPSIS SKP1-LIKE 8)	O.I.	H.G.	S.X.	Please select
0.15	14.1	0.93	HU08B06u_x_at	HU08B06u	-	-	1e-21	At2g36530	LOS2	O.I.	H.G.	S.X.	Please select
0.15	14.1	0.91	Contig4036_at	Contig4036	-	-	6e-2	At3g01120	MTO1 (METHIONINE OVERACCUMULATION 1)	O.I.	H.G.	S.X.	Please select
0.13	11.6	0.93	Contig15349_at	Contig15349	-	-	2e-1	At5g38730	pentatricopeptide (PPR) repeat-containing protein	O.I.	H.G.	S.X.	Please select
0.11	9.4	0.93	EBro04_SQ002_K02_at	EBro04_SQ002_K02	-	-	5e-15	At4g31985	60S ribosomal protein L39 (RPL39C)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
9.1	98.9	GSM238414	Endosperm 8DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.9	95.8	GSM382233	Root_Hg2	GSE15295	Mercury toxicity in barley roots
3.7	95.5	GSM382234	Root_Hg3	GSE15295	Mercury toxicity in barley roots
3.4	94.8	GSM238415	Endosperm 8DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.2	94.3	GSM238416	Endosperm 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.0	93.8	GSM261076	Albina e-16 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
2.6	92.3	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
2.6	92.3	GSM161148	7% SWC rep3	GSE6990	Barley drought stress
2.5	91.9	GSM261070	Albina f-17 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
2.4	91.4	GSM238435	Embryo 24 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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