Co-expression analysis

Gene ID	HI01B18w_s_at
Gene name
Homology with Arabidopsis	Similar to At3g21270: ADOF2 (HF=1e+0)
Module size	6 genes
NF	0.29
%ile	38.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.61	78.7	0.94	HI01B18w_s_at	HI01B18w	-	-	1e+0	At3g21270	ADOF2	O.I.	H.G.	S.X.	Please select
0.40	53.1	0.95	Contig13546_at	Contig13546	-	-	3e+0	At3g62528	unknown protein	O.I.	H.G.	S.X.	Please select
0.33	42.6	0.95	Contig13282_at	Contig13282	-	-	5e-8	At1g30540	ATPase, BadF/BadG/BcrA/BcrD-type family	O.I.	H.G.	S.X.	Please select
0.31	38.6	0.95	Contig8951_at	Contig8951	-	-	9e-4	At4g00090	transducin family protein / WD-40 repeat family protein	O.I.	H.G.	S.X.	Please select
0.21	22.6	0.95	Contig7098_at	Contig7098	-	-	1e-2	At1g56360	PAP6 (PURPLE ACID PHOSPHATASE 6)	O.I.	H.G.	S.X.	Please select
0.15	14.1	0.95	Contig12105_at	Contig12105	-	-	2e-2	At3g52640	nicastrin-related	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
26.8	99.8	GSM261046	after 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
15.8	99.6	GSM261047	after 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
11.8	99.3	GSM238410	Pericarp 8DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
8.7	98.9	GSM238408	Pericarp 4DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
8.3	98.8	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
8.1	98.7	GSM238411	Pericarp 8DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
8.0	98.7	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
6.1	98.0	GSM238430	Embryo 25DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.6	96.8	GSM238409	Pericarp 4DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.8	95.7	GSM160823	19% SWC rep1	GSE6990	Barley drought stress

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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