Co-expression analysis

Gene ID	HG01J06u_at
Gene name
Homology with Arabidopsis	Similar to At4g24600: unknown protein (HF=5e+0)
Module size	11 genes
NF	0.65
%ile	86.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.61	78.7	0.91	HG01J06u_at	HG01J06u	-	-	5e+0	At4g24600	unknown protein	O.I.	H.G.	S.X.	Please select
0.80	92.5	0.94	HO11K23S_s_at	HO11K23S	-	-	4e+0	At3g17420	GPK1	O.I.	H.G.	S.X.	Please select
0.73	88.7	0.93	Contig18430_at	Contig18430	-	-	2e-2	At1g18340	basal transcription factor complex subunit-related	O.I.	H.G.	S.X.	Please select
0.71	87.1	0.93	Contig20065_at	Contig20065	-	-	4e-1	At4g11600	ATGPX6 (GLUTATHIONE PEROXIDASE 6)	O.I.	H.G.	S.X.	Please select
0.70	86.0	0.94	Contig3565_s_at	Contig3565	-	-	2e-1	At4g01430	nodulin MtN21 family protein	O.I.	H.G.	S.X.	Please select
0.70	86.0	0.93	Contig7635_s_at	Contig7635	-	-	3e-1	At5g42630	ATS (ABERRANT TESTA SHAPE)	O.I.	H.G.	S.X.	Please select
0.56	74.3	0.93	HP01O07w_at	HP01O07w	-	-	3e+0	At5g16490	RIC4 (ROP-INTERACTIVE CRIB MOTIF-CONTAINING PROTEIN 4)	O.I.	H.G.	S.X.	Please select
0.56	74.3	0.94	Contig6960_at	Contig6960	-	-	1e+0	At4g29770	-	O.I.	H.G.	S.X.	Please select
0.53	69.7	0.95	Contig13565_at	Contig13565	-	-	9e+0	At4g29770	-	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.94	HVSMEb0005F19r2_at	HVSMEb0005F19r2	-	-	3e-1	At4g09010	APX4 (ASCORBATE PEROXIDASE 4)	O.I.	H.G.	S.X.	Please select
0.44	58.9	0.93	Contig9578_s_at	Contig9578	-	-	9e-13	At5g64030	dehydration-responsive protein-related	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.8	97.0	GSM146365	Maythorpe Root Control, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
4.5	96.7	GSM261047	after 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
4.5	96.7	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
4.0	96.0	GSM372995	genotype: 11542 - pathogen isolates: K1 - time: 8 - rep1	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
4.0	96.0	GSM372991	genotype: 11542 - pathogen isolates: 5874 - time: 32 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.7	95.5	GSM372985	genotype: 11542 - pathogen isolates: 5874 - time: 20 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.5	95.1	GSM146368	Maythorpe Root Salt, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
3.3	94.6	GSM372988	genotype: 11542 - pathogen isolates: 5874 - time: 24 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.2	94.3	GSM146362	Golden Promise Root Salt, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
3.1	94.1	GSM146359	Golden Promise Root Control, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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