Co-expression analysis

Gene ID	HF17H18r_s_at
Gene name
Homology with Arabidopsis	Similar to At4g03410: peroxisomal membrane protein-related (HF=3e+0)
Module size	11 genes
NF	0.41
%ile	57.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.60	77.3	0.93	HF17H18r_s_at	HF17H18r	-	-	3e+0	At4g03410	peroxisomal membrane protein-related	O.I.	H.G.	S.X.	Please select
0.63	80.3	0.95	Contig4260_at	Contig4260	-	-	5e-2	At4g37980	ELI3-1 (ELICITOR-ACTIVATED GENE 3-1)	O.I.	H.G.	S.X.	Please select
0.55	72.0	0.95	EBem09_SQ001_L06_s_at	EBem09_SQ001_L06	-	-	5e-1	At5g16470	zinc finger (C2H2 type) family protein	O.I.	H.G.	S.X.	Please select
0.53	69.7	0.95	Contig2783_s_at	Contig2783	-	-	5e+0	At5g01870	lipid transfer protein, putative	O.I.	H.G.	S.X.	Please select
0.47	62.2	0.96	HY08D02u_s_at	HY08D02u	-	-	6e+0	At2g31180	MYB14 (MYB DOMAIN PROTEIN 14)	O.I.	H.G.	S.X.	Please select
0.39	50.5	0.94	Contig14901_at	Contig14901	-	-	1e+0	At1g24060	unknown protein	O.I.	H.G.	S.X.	Please select
0.39	50.5	0.95	HT06G21u_s_at	HT06G21u	-	-	1e-8	At2g36530	LOS2	O.I.	H.G.	S.X.	Please select
0.36	47.1	0.95	HA26O09r_s_at	HA26O09r	-	-	6e+0	At3g52780	PAP20	O.I.	H.G.	S.X.	Please select
0.36	47.1	0.96	Contig9459_at	Contig9459	-	-	1e-2	At5g54800	GPT1	O.I.	H.G.	S.X.	Please select
0.26	30.4	0.96	Contig16073_at	Contig16073	-	-	3e-2	At5g37200	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.20	21.1	0.96	Contig2700_x_at	Contig2700	-	-	1e+0	At1g23890	NHL repeat-containing protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
8.1	98.7	GSM238432	Embryo 0 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
7.0	98.4	GSM238435	Embryo 24 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
7.0	98.4	GSM238433	Embryo 0 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
6.1	98.0	GSM238434	Embryo 24 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.8	97.8	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.6	97.7	GSM238431	Embryo 25DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
5.4	97.5	GSM282025	Control_dryseed_Morex_rep1	GSE11200	Expression data from malting barley seeds
5.4	97.5	GSM282041	Control_dryseed_Morex_rep2	GSE11200	Expression data from malting barley seeds
4.8	97.0	GSM238429	Embryo 16DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
4.6	96.8	GSM213441	Barley seeds control in Hoagland solution for 12hr	GSE8618	P. aeruginosa virulent factor to barley

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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