Co-expression analysis

Gene ID	HF12C18r_at
Gene name
Homology with Arabidopsis	Similar to At5g22410: peroxidase, putative (HF=1e+0)
Module size	6 genes
NF	0.33
%ile	43.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.73	88.7	0.96	HF12C18r_at	HF12C18r	-	-	1e+0	At5g22410	peroxidase, putative	O.I.	H.G.	S.X.	Please select
0.47	62.2	0.96	Contig9660_at	Contig9660	-	-	1e-1	At4g24750	-	O.I.	H.G.	S.X.	Please select
0.35	45.1	0.96	Contig9852_at	Contig9852	-	-	2e+1	At5g62260	DNA binding	O.I.	H.G.	S.X.	Please select
0.33	42.6	0.96	Contig9322_at	Contig9322	-	-	3e-3	At1g31220	phosphoribosylglycinamide formyltransferase	O.I.	H.G.	S.X.	Please select
0.22	24.2	0.96	Contig15889_at	Contig15889	-	-	2e+0	At4g29590	methyltransferase	O.I.	H.G.	S.X.	Please select
0.14	12.9	0.96	Contig7904_at	Contig7904	-	-	2e-4	At5g01220	SQD2 (sulfoquinovosyldiacylglycerol 2)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
11.8	99.3	GSM238410	Pericarp 8DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.7	97.7	GSM238411	Pericarp 8DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
5.0	97.2	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.5	96.7	GSM238409	Pericarp 4DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
4.5	96.7	GSM238412	Endosperm 4DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.9	95.8	GSM238413	Endosperm 4DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.7	95.5	GSM238430	Embryo 25DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.5	95.1	GSM282032	Malting_day1_Morex_rep1	GSE11200	Expression data from malting barley seeds
3.5	95.1	GSM146377	Maythorpe shoot Control, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
3.4	94.8	GSM146379	Maythorpe shoot Salt, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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