Co-expression analysis

Gene ID	HF05G20r_at
Gene name
Homology with Arabidopsis	Similar to At3g19850: phototropic-responsive NPH3 family protein (HF=8e-1)
Module size	7 genes
NF	0.36
%ile	48.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.40	53.1	0.89	HF05G20r_at	HF05G20r	-	-	8e-1	At3g19850	phototropic-responsive NPH3 family protein	O.I.	H.G.	S.X.	Please select
0.57	74.9	0.92	HVSMEg0007J08r2_at	HVSMEg0007J08r2	-	-	5e+0	At3g58760	ankyrin protein kinase, putative	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.93	HVSMEa0015G15r2_s_at	HVSMEa0015G15r2	-	-	8e-1	At3g60090	VQ motif-containing protein	O.I.	H.G.	S.X.	Please select
0.42	55.2	0.92	Contig13331_s_at	Contig13331	-	-	6e-16	At2g21860	violaxanthin de-epoxidase-related	O.I.	H.G.	S.X.	Please select
0.29	35.5	0.91	Contig11593_x_at	Contig11593	-	-	1e+1	Atcg00800	-	O.I.	H.G.	S.X.	Please select
0.25	28.9	0.93	Contig20667_at	Contig20667	-	-	1e+0	At5g08480	VQ motif-containing protein	O.I.	H.G.	S.X.	Please select
0.23	26.1	0.91	Contig2394_s_at	Contig2394	-	-	1e-7	At2g18730	diacylglycerol kinase, putative	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
6.9	98.3	GSM282038	Malting_kilned_Morex_rep1	GSE11200	Expression data from malting barley seeds
3.6	95.3	GSM261047	after 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
3.2	94.3	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
3.2	94.3	GSM382234	Root_Hg3	GSE15295	Mercury toxicity in barley roots
3.1	94.1	GSM261059	Xantha b-12 Hardened rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.0	93.8	GSM372951	genotype: Mla6 - pathogen isolates: 5874 - time: 24 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
2.9	93.4	GSM372954	genotype: Mla6 - pathogen isolates: 5874 - time: 32 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
2.8	93.1	GSM372948	genotype: Mla6 - pathogen isolates: 5874 - time: 20 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
2.8	93.1	GSM372968	genotype: Mla6 - pathogen isolates: K1 - time: 24 - rep1	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
2.8	93.1	GSM282031	Malting_day1_Harrington_rep1	GSE11200	Expression data from malting barley seeds

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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