Co-expression analysis

Gene ID	HD11F21r_at
Gene name
Homology with Arabidopsis	Similar to At2g29452: unknown protein (HF=9e-1)
Module size	7 genes
NF	0.35
%ile	46.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.59	75.8	0.95	HD11F21r_at	HD11F21r	-	-	9e-1	At2g29452	unknown protein	O.I.	H.G.	S.X.	Please select
0.37	47.9	0.95	Contig26263_at	Contig26263	-	-	4e+0	At5g54350	-	O.I.	H.G.	S.X.	Please select
0.33	42.6	0.95	Contig7562_at	Contig7562	-	-	2e-1	At2g43180	catalytic	O.I.	H.G.	S.X.	Please select
0.33	42.6	0.96	Contig25891_at	Contig25891	-	-	1e+0	At1g30350	pectate lyase family protein	O.I.	H.G.	S.X.	Please select
0.33	42.6	0.96	Contig12138_at	Contig12138	-	-	1e-4	At5g03080	phosphatidic acid phosphatase-related / PAP2-related	O.I.	H.G.	S.X.	Please select
0.23	26.1	0.95	Contig10534_s_at	Contig10534	-	-	3e-7	At3g14080	small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative	O.I.	H.G.	S.X.	Please select
0.21	22.6	0.96	Contig16123_at	Contig16123	-	-	2e-1	At5g07130	LAC13 (laccase 13)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
28.6	99.8	GSM382236	Root_Control2	GSE15295	Mercury toxicity in barley roots
15.4	99.6	GSM382235	Root_Control1	GSE15295	Mercury toxicity in barley roots
10.9	99.2	GSM382232	Root_Hg1	GSE15295	Mercury toxicity in barley roots
5.1	97.3	GSM382234	Root_Hg3	GSE15295	Mercury toxicity in barley roots
4.7	96.9	GSM382233	Root_Hg2	GSE15295	Mercury toxicity in barley roots
3.5	95.1	GSM238410	Pericarp 8DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.1	94.1	GSM215731	gibberellin treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
2.6	92.3	GSM282037	Malting_day1_Morex_rep2	GSE11200	Expression data from malting barley seeds
2.6	92.3	GSM215728	gibberellin treatment rep1	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
2.3	90.9	GSM238412	Endosperm 4DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage