CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID HD10C22r_x_at

Gene name
Homology with Arabidopsis Similar to At3g12130: KH domain-containing protein / zinc finger (CCCH type) family protein (HF=2e-3)

Module size 7 genes

NF 0.07

%ile 9.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.86 94.8 0.88 HD10C22r_x_at HD10C22r - - 2e-3 At3g12130 KH domain-containing protein / zinc finger (CCCH type) family protein O.I. H.G. S.X.
0.46 61.0 0.90 Contig1140_at Contig1140 - - 3e-17 At1g07790 HTB1 O.I. H.G. S.X.
0.22 24.2 0.92 Contig21965_at Contig21965 - - 2e+0 At2g13720 ATP binding / DNA binding / DNA topoisomerase (ATP-hydrolyzing) O.I. H.G. S.X.
0.12 10.4 0.94 Contig8795_at Contig8795 - - 6e-1 At2g26500 cytochrome b6f complex subunit (petM), putative O.I. H.G. S.X.
0.07 5.8 0.92 Contig7265_s_at Contig7265 - - 1e-57 At5g47080 CKB1 O.I. H.G. S.X.
0.03 2.6 0.89 Contig15746_at Contig15746 - - 2e+0 At1g73890 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein O.I. H.G. S.X.
0.03 2.6 0.91 Contig484_x_at Contig484 - - 1e-38 At1g09200 histone H3 O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.53	69.7	0.89	HU01I21w_at	HU01I21w	-	-	4e+0	At5g65720	NFS1	O.I.	H.G.	S.X.
0.43	56.4	0.89	rbags11k20_s_at	rbags11k20	-	-	2e-1	At3g18035	HON4	O.I.	H.G.	S.X.
0.40	53.1	0.87	Contig5694_at	Contig5694	-	-	2e+0	At2g05786	unknown protein	O.I.	H.G.	S.X.
0.36	47.1	0.93	Contig197_s_at	Contig197	-	-	1e-24	At5g59690	histone H4	O.I.	H.G.	S.X.
0.33	42.6	0.94	HVSMEl0024B05r2_at	HVSMEl0024B05r2	-	-	4e+0	At5g08480	VQ motif-containing protein	O.I.	H.G.	S.X.
0.32	40.3	0.89	Contig3981_at	Contig3981	-	-	2e+0	At5g59480	haloacid dehalogenase-like hydrolase family protein	O.I.	H.G.	S.X.
0.30	37.0	0.91	Contig13989_at	Contig13989	-	-	3e-12	At5g39660	CDF2 (CYCLING DOF FACTOR 2)	O.I.	H.G.	S.X.
0.25	28.9	0.87	Contig8835_at	Contig8835	-	-	1e-7	At5g52200	unknown protein	O.I.	H.G.	S.X.
0.25	28.9	0.87	HF01F13w_s_at	HF01F13w	-	-	2e+0	At5g02610	60S ribosomal protein L35 (RPL35D)	O.I.	H.G.	S.X.
0.25	28.9	0.92	Contig18714_at	Contig18714	-	-	2e+0	At1g67635	-	O.I.	H.G.	S.X.

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.0 97.2 GSM213441 Barley seeds control in Hoagland solution for 12hr GSE8618 P. aeruginosa virulent factor to barley
4.0 96.0 GSM213443 Barley seeds with P. aeruginosa PA5021 mutant for 12hr GSE8618 P. aeruginosa virulent factor to barley
3.9 95.8 GSM238410 Pericarp 8DAF; seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
3.7 95.5 GSM372962 genotype: Mla6 - pathogen isolates: K1 - time: 16 - rep1 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.6 95.3 GSM213436 Barley seeds with P. aeruginosa PAO1 for 12hr GSE8618 P. aeruginosa virulent factor to barley
3.6 95.3 GSM238411 Pericarp 8DAF; seed development; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
3.4 94.8 GSM261033 Dicktoo-chilling-rep1 GSE10329 Low temperature stress in cv. Dicktoo
3.3 94.6 GSM238434 Embryo 24 h; Seed germination; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
3.3 94.6 GSM282031 Malting_day1_Harrington_rep1 GSE11200 Expression data from malting barley seeds
3.1 94.1 GSM282036 Malting_steeped_Morex_rep2 GSE11200 Expression data from malting barley seeds

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage