Co-expression analysis

Gene ID	HD10C22r_x_at
Gene name
Homology with Arabidopsis	Similar to At3g12130: KH domain-containing protein / zinc finger (CCCH type) family protein (HF=2e-3)
Module size	7 genes
NF	0.07
%ile	9.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.86	94.8	0.88	HD10C22r_x_at	HD10C22r	-	-	2e-3	At3g12130	KH domain-containing protein / zinc finger (CCCH type) family protein	O.I.	H.G.	S.X.	Please select
0.46	61.0	0.90	Contig1140_at	Contig1140	-	-	3e-17	At1g07790	HTB1	O.I.	H.G.	S.X.	Please select
0.22	24.2	0.92	Contig21965_at	Contig21965	-	-	2e+0	At2g13720	ATP binding / DNA binding / DNA topoisomerase (ATP-hydrolyzing)	O.I.	H.G.	S.X.	Please select
0.12	10.4	0.94	Contig8795_at	Contig8795	-	-	6e-1	At2g26500	cytochrome b6f complex subunit (petM), putative	O.I.	H.G.	S.X.	Please select
0.07	5.8	0.92	Contig7265_s_at	Contig7265	-	-	1e-57	At5g47080	CKB1	O.I.	H.G.	S.X.	Please select
0.03	2.6	0.89	Contig15746_at	Contig15746	-	-	2e+0	At1g73890	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	O.I.	H.G.	S.X.	Please select
0.03	2.6	0.91	Contig484_x_at	Contig484	-	-	1e-38	At1g09200	histone H3	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.0	97.2	GSM213441	Barley seeds control in Hoagland solution for 12hr	GSE8618	P. aeruginosa virulent factor to barley
4.0	96.0	GSM213443	Barley seeds with P. aeruginosa PA5021 mutant for 12hr	GSE8618	P. aeruginosa virulent factor to barley
3.9	95.8	GSM238410	Pericarp 8DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.7	95.5	GSM372962	genotype: Mla6 - pathogen isolates: K1 - time: 16 - rep1	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.6	95.3	GSM213436	Barley seeds with P. aeruginosa PAO1 for 12hr	GSE8618	P. aeruginosa virulent factor to barley
3.6	95.3	GSM238411	Pericarp 8DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.4	94.8	GSM261033	Dicktoo-chilling-rep1	GSE10329	Low temperature stress in cv. Dicktoo
3.3	94.6	GSM238434	Embryo 24 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.3	94.6	GSM282031	Malting_day1_Harrington_rep1	GSE11200	Expression data from malting barley seeds
3.1	94.1	GSM282036	Malting_steeped_Morex_rep2	GSE11200	Expression data from malting barley seeds

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.158256.1.A1_at, orthologous to the query gene, HD10C22r_x_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.84	97.1	PtpAffx.158256.1.A1_at	At3g12130	hypothetical protein	-	4e-1	At5g42530	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.58	84.2	Ptp.7718.1.S1_at	At3g12130	hypothetical protein	-	4e-7	At2g34970	eIF4-gamma/eIF5/eIF2-epsilon domain-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.53	80.5	Ptp.2600.1.S1_s_at	At3g12130	-	-	8e-61	At4g27230	HTA2 (histone H2A)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.48	75.4	Ptp.5697.1.S1_s_at	At3g12130	hypothetical protein	-	2e+0	At4g31700	RPS6 (RIBOSOMAL PROTEIN S6)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.40	67.0	PtpAffx.1058.1.S1_a_at	At3g12130	hypothetical protein	-	6e-45	At5g55160	SUMO2 (SMALL UBIQUITIN-LIKE MODIFIER 2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.39	64.6	Ptp.2018.1.S1_a_at	At3g12130	hypothetical protein	-	9e-70	At1g70600	structural constituent of ribosome	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.33	57.5	Ptp.5680.1.S1_s_at	At3g12130	hypothetical protein	-	2e-7	At5g47210	nuclear RNA-binding protein, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.31	53.7	PtpAffx.100081.1.A1_at	At3g12130	-	-	1e+0	At2g29410	MTPB1 (METAL TOLERANCE PROTEIN B1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.28	50.5	PtpAffx.18926.2.S1_at	At3g12130	nucleosome/chromatin assembly factor group	-	1e-24	At2g19480	NAP1	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.26	45.2	PtpAffx.291.7.A1_s_at	At3g12130	-	-	3e-1	At1g07930	elongation factor 1-alpha / EF-1-alpha	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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