CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID HD10C22r_x_at

Gene name
Homology with Arabidopsis Similar to At3g12130: KH domain-containing protein / zinc finger (CCCH type) family protein (HF=2e-3)

Module size 7 genes

NF 0.07

%ile 9.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.86 94.8 0.88 HD10C22r_x_at HD10C22r - - 2e-3 At3g12130 KH domain-containing protein / zinc finger (CCCH type) family protein O.I. H.G. S.X.
0.46 61.0 0.90 Contig1140_at Contig1140 - - 3e-17 At1g07790 HTB1 O.I. H.G. S.X.
0.22 24.2 0.92 Contig21965_at Contig21965 - - 2e+0 At2g13720 ATP binding / DNA binding / DNA topoisomerase (ATP-hydrolyzing) O.I. H.G. S.X.
0.12 10.4 0.94 Contig8795_at Contig8795 - - 6e-1 At2g26500 cytochrome b6f complex subunit (petM), putative O.I. H.G. S.X.
0.07 5.8 0.92 Contig7265_s_at Contig7265 - - 1e-57 At5g47080 CKB1 O.I. H.G. S.X.
0.03 2.6 0.89 Contig15746_at Contig15746 - - 2e+0 At1g73890 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein O.I. H.G. S.X.
0.03 2.6 0.91 Contig484_x_at Contig484 - - 1e-38 At1g09200 histone H3 O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.0 97.2 GSM213441 Barley seeds control in Hoagland solution for 12hr GSE8618 P. aeruginosa virulent factor to barley
4.0 96.0 GSM213443 Barley seeds with P. aeruginosa PA5021 mutant for 12hr GSE8618 P. aeruginosa virulent factor to barley
3.9 95.8 GSM238410 Pericarp 8DAF; seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
3.7 95.5 GSM372962 genotype: Mla6 - pathogen isolates: K1 - time: 16 - rep1 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.6 95.3 GSM213436 Barley seeds with P. aeruginosa PAO1 for 12hr GSE8618 P. aeruginosa virulent factor to barley
3.6 95.3 GSM238411 Pericarp 8DAF; seed development; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
3.4 94.8 GSM261033 Dicktoo-chilling-rep1 GSE10329 Low temperature stress in cv. Dicktoo
3.3 94.6 GSM238434 Embryo 24 h; Seed germination; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
3.3 94.6 GSM282031 Malting_day1_Harrington_rep1 GSE11200 Expression data from malting barley seeds
3.1 94.1 GSM282036 Malting_steeped_Morex_rep2 GSE11200 Expression data from malting barley seeds

Inter-species module comparison

A co-expression module including the rice gene, Os04g0665700, orthologous to the query gene, HD10C22r_x_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.73 91.1 Os04g0665700 At3g12130 - KH, type 1 domain containing protein 7e-1 At3g56340 40S ribosomal protein S26 (RPS26C) O.I. H.G. S.X.
0.40 51.1 Os07g0609700 At3g12130 - DC1 domain containing protein 9e-24 At2g35210 RPA (ROOT AND POLLEN ARFGAP) O.I. H.G. S.X.
0.24 22.4 Os09g0473300 At3g12130 - - 4e+0 At5g56600 PRF3 (PROFILIN 3) O.I. H.G. S.X.
0.23 21.2 Os03g0802300 At3g12130 - Hypothetical protein 3e-1 At5g61270 PIF7 (PHYTOCHROME-INTERACTING FACTOR7) O.I. H.G. S.X.
0.23 21.2 Os08g0127300 At3g12130 - Hypothetical protein 2e-2 At5g63320 - O.I. H.G. S.X.
0.17 12.6 Os02g0301500 At3g12130 - Helicase-associated region domain containingprotein 5e-52 At3g26560 ATP-dependent RNA helicase, putative O.I. H.G. S.X.
0.08 4.2 Os12g0638600 At3g12130 - Hypothetical protein 3e-4 At5g20170 unknown protein O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage