Co-expression analysis

Gene ID	HB25K17r_at
Gene name
Homology with Arabidopsis	Similar to At4g09260: unknown protein (HF=2e+0)
Module size	7 genes
NF	0.52
%ile	71.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.83	94.0	0.89	HB25K17r_at	HB25K17r	-	-	2e+0	At4g09260	unknown protein	O.I.	H.G.	S.X.	Please select
0.71	87.1	0.87	Contig12570_at	Contig12570	-	-	5e-29	At3g53570	AFC1 (ARABIDOPSIS FUS3-COMPLEMENTING GENE 1)	O.I.	H.G.	S.X.	Please select
0.61	78.7	0.85	S0001000055K01F1_at	S0001000055K01F1	-	-	3e+0	At2g24310	unknown protein	O.I.	H.G.	S.X.	Please select
0.60	77.3	0.89	Contig1648_at	Contig1648	-	-	3e-18	At1g66200	ATGSR2	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.90	Contig18921_at	Contig18921	-	-	1e+0	At1g49520	SWIB complex BAF60b domain-containing protein	O.I.	H.G.	S.X.	Please select
0.33	42.6	0.89	HVSMEn0017F07r2_at	HVSMEn0017F07r2	-	-	3e-7	At1g78560	bile acid:sodium symporter family protein	O.I.	H.G.	S.X.	Please select
0.15	14.1	0.89	HB25J22r_x_at	HB25J22r	-	-	9e+0	At5g04790	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
14.0	99.5	GSM261047	after 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
11.6	99.3	GSM431547	pathogen isolates: Mock - rep2	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
8.3	98.8	GSM261046	after 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
5.1	97.3	GSM282038	Malting_kilned_Morex_rep1	GSE11200	Expression data from malting barley seeds
4.8	97.0	GSM431569	pathogen isolates: Mock inoculated control - rep2	GSE17240	Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
4.4	96.6	GSM431549	pathogen isolates: Polymyxa graminis - rep1	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
4.3	96.4	GSM382234	Root_Hg3	GSE15295	Mercury toxicity in barley roots
3.7	95.5	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
3.7	95.5	GSM372963	genotype: Mla6 - pathogen isolates: K1 - time: 16 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.6	95.3	GSM372945	genotype: Mla6 - pathogen isolates: 5874 - time: 16 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene

Inter-species module comparison

A co-expression module including the grape gene, 1609889_at, orthologous to the query gene, HB25K17r_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.80	93.6	1609889_at	At4g09260	hypothetical protein LOC100260375	-	1e-1	At3g18640	zinc finger protein-related	O.I.	H.G.	S.X.	Please select
0.77	92.3	1609505_at	At4g09260	hypothetical protein LOC100259859	-	2e-1	At3g19850	phototropic-responsive NPH3 family protein	O.I.	H.G.	S.X.	Please select
0.67	87.9	1607537_at	At4g09260	hypothetical protein LOC100254390	-	2e+0	At4g12530	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	O.I.	H.G.	S.X.	Please select
0.67	87.9	1611085_at	At4g09260	hypothetical protein LOC100241544	-	9e-2	At1g60060	unknown protein	O.I.	H.G.	S.X.	Please select
0.65	85.0	1614984_at	At4g09260	hypothetical protein LOC100250663	-	8e-3	At1g49390	oxidoreductase, 2OG-Fe(II) oxygenase family protein	O.I.	H.G.	S.X.	Please select
0.60	81.9	1615645_at	At4g09260	hypothetical protein LOC100257930	-	1e+0	At2g42350	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.59	80.6	1607973_at	At4g09260	-	-	7e-4	At4g18960	AG (AGAMOUS)	O.I.	H.G.	S.X.	Please select
0.53	75.2	1621723_at	At4g09260	hypothetical protein LOC100248744	-	6e-14	At1g61110	anac025 (Arabidopsis NAC domain containing protein 25)	O.I.	H.G.	S.X.	Please select
0.51	73.2	1607719_at	At4g09260	hypothetical protein LOC100253660	-	3e-10	At3g61880	CYP78A9 (CYTOCHROME P450 78A9)	O.I.	H.G.	S.X.	Please select
0.50	72.7	1613748_at	At4g09260	AP1-like protein	-	4e-17	At2g03710	SEP4 (SEPALLATA 4)	O.I.	H.G.	S.X.	Please select
0.49	69.3	1610413_at	At4g09260	hypothetical protein LOC100240916	-	3e-4	At1g04280	unknown protein	O.I.	H.G.	S.X.	Please select
0.44	64.1	1615925_at	At4g09260	hypothetical protein LOC100260124	-	3e-4	At4g10020	AtHSD5 (hydroxysteroid dehydrogenase 5)	O.I.	H.G.	S.X.	Please select
0.42	60.1	1617262_at	At4g09260	hypothetical protein LOC100251233	-	4e+0	At2g04395	DNA binding	O.I.	H.G.	S.X.	Please select
0.38	53.6	1614771_at	At4g09260	hypothetical protein LOC100242179	-	1e+0	At5g62200	embryo-specific protein-related	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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