CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID HB25K17r_at

Gene name
Homology with Arabidopsis Similar to At4g09260: unknown protein (HF=2e+0)

Module size 7 genes

NF 0.52

%ile 71.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.83 94.0 0.89 HB25K17r_at HB25K17r - - 2e+0 At4g09260 unknown protein O.I. H.G. S.X.
0.71 87.1 0.87 Contig12570_at Contig12570 - - 5e-29 At3g53570 AFC1 (ARABIDOPSIS FUS3-COMPLEMENTING GENE 1) O.I. H.G. S.X.
0.61 78.7 0.85 S0001000055K01F1_at S0001000055K01F1 - - 3e+0 At2g24310 unknown protein O.I. H.G. S.X.
0.60 77.3 0.89 Contig1648_at Contig1648 - - 3e-18 At1g66200 ATGSR2 O.I. H.G. S.X.
0.50 66.9 0.90 Contig18921_at Contig18921 - - 1e+0 At1g49520 SWIB complex BAF60b domain-containing protein O.I. H.G. S.X.
0.33 42.6 0.89 HVSMEn0017F07r2_at HVSMEn0017F07r2 - - 3e-7 At1g78560 bile acid:sodium symporter family protein O.I. H.G. S.X.
0.15 14.1 0.89 HB25J22r_x_at HB25J22r - - 9e+0 At5g04790 unknown protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
14.0 99.5 GSM261047 after 3 days in mannitol medium rep3 GSE10330 Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
11.6 99.3 GSM431547 pathogen isolates: Mock - rep2 GSE17238 Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
8.3 98.8 GSM261046 after 3 days in mannitol medium rep2 GSE10330 Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
5.1 97.3 GSM282038 Malting_kilned_Morex_rep1 GSE11200 Expression data from malting barley seeds
4.8 97.0 GSM431569 pathogen isolates: Mock inoculated control - rep2 GSE17240 Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
4.4 96.6 GSM431549 pathogen isolates: Polymyxa graminis - rep1 GSE17238 Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
4.3 96.4 GSM382234 Root_Hg3 GSE15295 Mercury toxicity in barley roots
3.7 95.5 GSM261045 after 3 days in mannitol medium rep1 GSE10330 Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
3.7 95.5 GSM372963 genotype: Mla6 - pathogen isolates: K1 - time: 16 - rep2 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.6 95.3 GSM372945 genotype: Mla6 - pathogen isolates: 5874 - time: 16 - rep2 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene

Inter-species module comparison

A co-expression module including the wheat gene, Ta.5070.1.A1_at, orthologous to the query gene, HB25K17r_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.71 88.0 Ta.5070.1.A1_at At4g09260 - - 1e+0 At2g39855 unknown protein O.I. H.G. S.X.
0.73 89.1 Ta.9921.1.S1_at At4g09260 - - 1e+0 At5g23710 DNA binding / DNA-directed RNA polymerase O.I. H.G. S.X.
0.60 81.0 Ta.10147.3.S1_x_at At4g09260 - - 5e+0 At2g21660 CCR2 (COLD, CIRCADIAN RHYTHM, AND RNA BINDING 2) O.I. H.G. S.X.
0.60 81.0 TaAffx.25063.1.S1_at At4g09260 - - 3e-1 At4g35530 phosphatidylinositolglycan-related O.I. H.G. S.X.
0.50 72.4 Ta.13237.1.A1_s_at At4g09260 - - 1e+0 At1g55330 AGP21 O.I. H.G. S.X.
0.25 32.1 Ta.811.2.S1_a_at At4g09260 - - 4e+0 At5g01712 CPuORF48 (Conserved peptide upstream open reading frame 48) O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays

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