Co-expression analysis

Gene ID	HB23F22r_at
Gene name
Homology with Arabidopsis	Similar to At3g58010: unknown protein (HF=3e+0)
Module size	11 genes
NF	0.51
%ile	71.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.95	99.2	0.89	HB23F22r_at	HB23F22r	-	-	3e+0	At3g58010	unknown protein	O.I.	H.G.	S.X.	Please select
0.52	68.3	0.90	Contig13417_at	Contig13417	-	-	2e-4	At3g06970	RNA binding / nucleic acid binding / nucleotide binding	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.99	Contig3147_at	Contig3147	-	-	3e-4	At1g09940	HEMA2	O.I.	H.G.	S.X.	Please select
0.48	63.2	0.93	Contig7800_at	Contig7800	-	-	2e-33	At5g53300	UBC10 (ubiquitin-conjugating enzyme 10)	O.I.	H.G.	S.X.	Please select
0.47	62.2	0.98	Contig26171_at	Contig26171	-	-	2e+0	At1g52580	ATRBL5 (ARABIDOPSIS RHOMBOID-LIKE PROTEIN 5)	O.I.	H.G.	S.X.	Please select
0.47	62.2	0.98	Contig10718_at	Contig10718	-	-	2e-7	At1g78440	ATGA2OX1 (gibberellin 2-oxidase 1)	O.I.	H.G.	S.X.	Please select
0.46	61.0	0.96	Contig10910_at	Contig10910	-	-	3e+0	At4g36430	peroxidase, putative	O.I.	H.G.	S.X.	Please select
0.44	58.9	0.98	Contig23108_at	Contig23108	-	-	8e-1	At3g16280	DNA binding / transcription factor	O.I.	H.G.	S.X.	Please select
0.44	58.9	0.98	Contig18000_at	Contig18000	knotted 1	-	1e-33	At1g62360	STM (SHOOT MERISTEMLESS)	O.I.	H.G.	S.X.	Please select
0.43	56.4	0.88	HA28N02r_s_at	HA28N02r	-	-	1e-8	At2g23810	TET8 (TETRASPANIN8)	O.I.	H.G.	S.X.	Please select
0.37	47.9	0.91	Contig15900_at	Contig15900	-	-	5e+0	At5g42860	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.2	94.3	GSM238410	Pericarp 8DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.0	93.8	GSM261022	ABA-Control-rep2	GSE10328	ABA experiment
3.0	93.8	GSM261038	Dicktoo-subzero-rep3	GSE10329	Low temperature stress in cv. Dicktoo
2.9	93.4	GSM261021	ABA-Control-rep1	GSE10328	ABA experiment
2.8	93.1	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
2.8	93.1	GSM146373	Golden Promise shoot Salt, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
2.8	93.1	GSM238413	Endosperm 4DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
2.7	92.7	GSM146375	Maythorpe shoot Control, biological rep1	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
2.7	92.7	GSM261036	Dicktoo-subzero-rep1	GSE10329	Low temperature stress in cv. Dicktoo
2.7	92.7	GSM146372	Golden Promise shoot Salt, biological rep 1	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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