Co-expression analysis

Gene ID HB23F22r_at
Gene name
Homology with ArabidopsisSimilar to At3g58010: unknown protein (HF=3e+0)
Module size 11 genes
NF 0.51
%ile 71.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9599.20.89HB23F22r_atHB23F22r--3e+0At3g58010unknown proteinO.I.H.G.S.X.
0.5268.30.90Contig13417_atContig13417--2e-4At3g06970RNA binding / nucleic acid binding / nucleotide bindingO.I.H.G.S.X.
0.5066.90.99Contig3147_atContig3147--3e-4At1g09940HEMA2O.I.H.G.S.X.
0.4863.20.93Contig7800_atContig7800--2e-33At5g53300UBC10 (ubiquitin-conjugating enzyme 10)O.I.H.G.S.X.
0.4762.20.98Contig26171_atContig26171--2e+0At1g52580ATRBL5 (ARABIDOPSIS RHOMBOID-LIKE PROTEIN 5)O.I.H.G.S.X.
0.4762.20.98Contig10718_atContig10718--2e-7At1g78440ATGA2OX1 (gibberellin 2-oxidase 1)O.I.H.G.S.X.
0.4661.00.96Contig10910_atContig10910--3e+0At4g36430peroxidase, putativeO.I.H.G.S.X.
0.4458.90.98Contig23108_atContig23108--8e-1At3g16280DNA binding / transcription factorO.I.H.G.S.X.
0.4458.90.98Contig18000_atContig18000knotted 1-1e-33At1g62360STM (SHOOT MERISTEMLESS)O.I.H.G.S.X.
0.4356.40.88HA28N02r_s_atHA28N02r--1e-8At2g23810TET8 (TETRASPANIN8)O.I.H.G.S.X.
0.3747.90.91Contig15900_atContig15900--5e+0At5g42860unknown proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.294.3GSM238410Pericarp 8DAF; seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.093.8GSM261022ABA-Control-rep2GSE10328ABA experimentLink to GEO
3.093.8GSM261038Dicktoo-subzero-rep3GSE10329Low temperature stress in cv. DicktooLink to GEO
2.993.4GSM261021ABA-Control-rep1GSE10328ABA experimentLink to GEO
2.893.1GSM238428Embryo 16DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
2.893.1GSM146373Golden Promise shoot Salt, biological rep 2GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO
2.893.1GSM238413Endosperm 4DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
2.792.7GSM146375Maythorpe shoot Control, biological rep1GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO
2.792.7GSM261036Dicktoo-subzero-rep1GSE10329Low temperature stress in cv. DicktooLink to GEO
2.792.7GSM146372Golden Promise shoot Salt, biological rep 1GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



Back to the CoP portal site

Back to the KAGIANA project homepage