CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID HB18P10r_at

Gene name
Homology with Arabidopsis Similar to At1g11850: unknown protein (HF=3e+0)

Module size 6 genes

NF 0.16

%ile 19.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.1 0.75 HB18P10r_at HB18P10r - - 3e+0 At1g11850 unknown protein O.I. H.G. S.X.
0.36 47.1 0.97 Contig4072_at Contig4072 - - 2e+0 At2g31610 40S ribosomal protein S3 (RPS3A) O.I. H.G. S.X.
0.36 47.1 0.97 Contig30_s_at Contig30 - - 4e-19 At5g59690 histone H4 O.I. H.G. S.X.
0.23 26.1 0.97 Contig3806_s_at Contig3806 - - 1e-3 At2g43710 SSI2 O.I. H.G. S.X.
0.15 14.1 0.96 Contig20549_at Contig20549 - - 2e-27 At2g39480 PGP6 (P-GLYCOPROTEIN 6) O.I. H.G. S.X.
0.05 4.1 0.94 Contig13652_at Contig13652 - - 8e-7 At1g32090 early-responsive to dehydration protein-related / ERD protein-related O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.91	98.1	0.75	HB18P10r_at	HB18P10r	-	-	3e+0	At1g11850	unknown protein	O.I.	H.G.	S.X.
0.36	47.1	0.97	Contig4072_at	Contig4072	-	-	2e+0	At2g31610	40S ribosomal protein S3 (RPS3A)	O.I.	H.G.	S.X.
0.36	47.1	0.97	Contig30_s_at	Contig30	-	-	4e-19	At5g59690	histone H4	O.I.	H.G.	S.X.
0.23	26.1	0.97	Contig3806_s_at	Contig3806	-	-	1e-3	At2g43710	SSI2	O.I.	H.G.	S.X.
0.15	14.1	0.96	Contig20549_at	Contig20549	-	-	2e-27	At2g39480	PGP6 (P-GLYCOPROTEIN 6)	O.I.	H.G.	S.X.
0.05	4.1	0.94	Contig13652_at	Contig13652	-	-	8e-7	At1g32090	early-responsive to dehydration protein-related / ERD protein-related	O.I.	H.G.	S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
6.6 98.2 GSM372955 genotype: Mla6 - pathogen isolates: 5874 - time: 32 - rep3 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
4.8 97.0 GSM431549 pathogen isolates: Polymyxa graminis - rep1 GSE17238 Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
4.2 96.3 GSM372954 genotype: Mla6 - pathogen isolates: 5874 - time: 32 - rep2 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.7 95.5 GSM373003 genotype: 11542 - pathogen isolates: K1 - time: 20 - rep3 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.6 95.3 GSM130803 JA, biological rep1 GSE5605 Expression data from barley under salinity stress and JA treatment
3.5 95.1 GSM372984 genotype: 11542 - pathogen isolates: 5874 - time: 20 - rep2 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.3 94.6 GSM372963 genotype: Mla6 - pathogen isolates: K1 - time: 16 - rep2 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.1 94.1 GSM431546 pathogen isolates: Mock - rep1 GSE17238 Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
3.1 94.1 GSM372951 genotype: Mla6 - pathogen isolates: 5874 - time: 24 - rep2 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
2.8 93.1 GSM372987 genotype: 11542 - pathogen isolates: 5874 - time: 24 - rep2 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
6.6	98.2	GSM372955	genotype: Mla6 - pathogen isolates: 5874 - time: 32 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
4.8	97.0	GSM431549	pathogen isolates: Polymyxa graminis - rep1	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
4.2	96.3	GSM372954	genotype: Mla6 - pathogen isolates: 5874 - time: 32 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.7	95.5	GSM373003	genotype: 11542 - pathogen isolates: K1 - time: 20 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.6	95.3	GSM130803	JA, biological rep1	GSE5605	Expression data from barley under salinity stress and JA treatment
3.5	95.1	GSM372984	genotype: 11542 - pathogen isolates: 5874 - time: 20 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.3	94.6	GSM372963	genotype: Mla6 - pathogen isolates: K1 - time: 16 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.1	94.1	GSM431546	pathogen isolates: Mock - rep1	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
3.1	94.1	GSM372951	genotype: Mla6 - pathogen isolates: 5874 - time: 24 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
2.8	93.1	GSM372987	genotype: 11542 - pathogen isolates: 5874 - time: 24 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.86908.1.S1_at, orthologous to the query gene, HB18P10r_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.82 96.3 PtpAffx.86908.1.S1_at At1g11850 hypothetical protein - 1e+0 At5g28610 - O.I. H.G. S.X.
0.90 97.9 PtpAffx.215817.1.S1_at At1g11850 AP2/ERF domain-containing transcription factor - 8e-7 At3g23240 ERF1 (ETHYLENE RESPONSE FACTOR 1) O.I. H.G. S.X.
0.90 97.9 PtpAffx.106356.1.S1_at At1g11850 AP2/ERF domain-containing transcription factor - 5e+0 At3g15050 IQD10 (IQ-domain 10) O.I. H.G. S.X.
0.90 97.9 PtpAffx.8810.1.S1_at At1g11850 AP2/ERF domain-containing transcription factor /// AP2/ERF domain-containing transcription factor - 2e-34 At1g21910 AP2 domain-containing transcription factor family protein O.I. H.G. S.X.
0.89 97.8 PtpAffx.9959.1.A1_at At1g11850 hypothetical protein - 1e+0 At3g59450 calcium-binding EF hand family protein O.I. H.G. S.X.
0.88 97.7 PtpAffx.8577.2.A1_at At1g11850 - - 2e-31 At4g08950 EXO (EXORDIUM) O.I. H.G. S.X.
0.88 97.7 PtpAffx.204670.1.S1_at At1g11850 AP2/ERF domain-containing transcription factor - 7e-9 At1g43160 RAP2.6 (related to AP2 6) O.I. H.G. S.X.
0.88 97.7 PtpAffx.203035.1.S1_at At1g11850 AP2/ERF domain-containing transcription factor - 3e-2 At2g47520 AP2 domain-containing transcription factor, putative O.I. H.G. S.X.
0.87 97.5 PtpAffx.119343.2.A1_a_at At1g11850 hypothetical protein - 4e-6 At4g29780 unknown protein O.I. H.G. S.X.
0.84 97.1 PtpAffx.93687.1.S1_at At1g11850 AP2/ERF domain-containing transcription factor - 1e+0 At1g71450 AP2 domain-containing transcription factor, putative O.I. H.G. S.X.
0.84 97.1 PtpAffx.54562.1.A1_at At1g11850 AP2/ERF domain-containing transcription factor - 8e-31 At5g51990 CBF4 (C- REPEAT-BINDING FACTOR 4) O.I. H.G. S.X.
0.84 97.1 PtpAffx.93687.1.S1_s_at At1g11850 AP2/ERF domain-containing transcription factor - 1e+0 At1g71450 AP2 domain-containing transcription factor, putative O.I. H.G. S.X.
0.84 97.1 PtpAffx.30602.1.A1_at At1g11850 hypothetical protein - 1e-4 At5g17800 AtMYB56 (myb domain protein 56) O.I. H.G. S.X.
0.83 97.0 PtpAffx.158361.1.S1_at At1g11850 - - 1e+0 At3g47510 unknown protein O.I. H.G. S.X.
0.81 96.1 PtpAffx.221103.1.S1_at At1g11850 - - 7e-5 At2g44840 ERF13 (ETHYLENE-RESPONSIVE ELEMENT BINDING FACTOR 13) O.I. H.G. S.X.
0.79 95.3 PtpAffx.129941.1.S1_s_at At1g11850 hypothetical protein - 7e-10 At2g31180 MYB14 (MYB DOMAIN PROTEIN 14) O.I. H.G. S.X.
0.78 95.1 PtpAffx.35610.1.A1_at At1g11850 hypothetical protein - 1e-13 At1g06180 ATMYB13 (MYB DOMAIN PROTEIN 13) O.I. H.G. S.X.
0.77 94.9 PtpAffx.59348.1.S1_at At1g11850 hypothetical protein - 3e-1 At5g08370 AtAGAL2 (Arabidopsis thaliana ALPHA-GALACTOSIDASE 2) O.I. H.G. S.X.
0.77 94.9 PtpAffx.106356.1.S1_s_at At1g11850 AP2/ERF domain-containing transcription factor - 9e-2 At5g19800 hydroxyproline-rich glycoprotein family protein O.I. H.G. S.X.
0.76 94.3 PtpAffx.204806.1.S1_at At1g11850 hypothetical protein - 2e-2 At5g12340 unknown protein O.I. H.G. S.X.
0.70 91.7 Ptp.7458.1.S1_at At1g11850 - - 5e-9 At4g27280 calcium-binding EF hand family protein O.I. H.G. S.X.
0.70 91.7 Ptp.3396.1.S1_at At1g11850 hypothetical protein - 1e-5 At3g50310 MAPKKK20 O.I. H.G. S.X.
0.68 91.3 Ptp.3396.1.S1_s_at At1g11850 hypothetical protein - 1e-5 At3g50310 MAPKKK20 O.I. H.G. S.X.
0.68 91.3 Ptp.4398.2.A1_at At1g11850 hypothetical protein - 8e-4 At1g14860 atnudt18 (Arabidopsis thaliana Nudix hydrolase homolog 18) O.I. H.G. S.X.
0.66 88.7 Ptp.4210.1.S1_at At1g11850 - - 6e-2 At5g35120 unknown protein O.I. H.G. S.X.
0.60 86.0 PtpAffx.119343.1.A1_a_at At1g11850 hypothetical protein - 4e-10 At5g12010 unknown protein O.I. H.G. S.X.
0.56 83.9 PtpAffx.142991.1.S1_at At1g11850 hypothetical protein - 1e+0 At5g40120 AGL76 (AGAMOUS-LIKE 76) O.I. H.G. S.X.
0.56 83.9 PtpAffx.201811.1.S1_at At1g11850 hypothetical protein - 2e-7 At5g64660 U-box domain-containing protein O.I. H.G. S.X.
0.48 75.4 PtpAffx.223981.1.S1_s_at At1g11850 hypothetical protein - 2e-1 At3g30845 unknown protein O.I. H.G. S.X.

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.82	96.3	PtpAffx.86908.1.S1_at	At1g11850	hypothetical protein	-	1e+0	At5g28610	-	O.I.	H.G.	S.X.
0.90	97.9	PtpAffx.215817.1.S1_at	At1g11850	AP2/ERF domain-containing transcription factor	-	8e-7	At3g23240	ERF1 (ETHYLENE RESPONSE FACTOR 1)	O.I.	H.G.	S.X.
0.90	97.9	PtpAffx.106356.1.S1_at	At1g11850	AP2/ERF domain-containing transcription factor	-	5e+0	At3g15050	IQD10 (IQ-domain 10)	O.I.	H.G.	S.X.
0.90	97.9	PtpAffx.8810.1.S1_at	At1g11850	AP2/ERF domain-containing transcription factor /// AP2/ERF domain-containing transcription factor	-	2e-34	At1g21910	AP2 domain-containing transcription factor family protein	O.I.	H.G.	S.X.
0.89	97.8	PtpAffx.9959.1.A1_at	At1g11850	hypothetical protein	-	1e+0	At3g59450	calcium-binding EF hand family protein	O.I.	H.G.	S.X.
0.88	97.7	PtpAffx.8577.2.A1_at	At1g11850	-	-	2e-31	At4g08950	EXO (EXORDIUM)	O.I.	H.G.	S.X.
0.88	97.7	PtpAffx.204670.1.S1_at	At1g11850	AP2/ERF domain-containing transcription factor	-	7e-9	At1g43160	RAP2.6 (related to AP2 6)	O.I.	H.G.	S.X.
0.88	97.7	PtpAffx.203035.1.S1_at	At1g11850	AP2/ERF domain-containing transcription factor	-	3e-2	At2g47520	AP2 domain-containing transcription factor, putative	O.I.	H.G.	S.X.
0.87	97.5	PtpAffx.119343.2.A1_a_at	At1g11850	hypothetical protein	-	4e-6	At4g29780	unknown protein	O.I.	H.G.	S.X.
0.84	97.1	PtpAffx.93687.1.S1_at	At1g11850	AP2/ERF domain-containing transcription factor	-	1e+0	At1g71450	AP2 domain-containing transcription factor, putative	O.I.	H.G.	S.X.
0.84	97.1	PtpAffx.54562.1.A1_at	At1g11850	AP2/ERF domain-containing transcription factor	-	8e-31	At5g51990	CBF4 (C- REPEAT-BINDING FACTOR 4)	O.I.	H.G.	S.X.
0.84	97.1	PtpAffx.93687.1.S1_s_at	At1g11850	AP2/ERF domain-containing transcription factor	-	1e+0	At1g71450	AP2 domain-containing transcription factor, putative	O.I.	H.G.	S.X.
0.84	97.1	PtpAffx.30602.1.A1_at	At1g11850	hypothetical protein	-	1e-4	At5g17800	AtMYB56 (myb domain protein 56)	O.I.	H.G.	S.X.
0.83	97.0	PtpAffx.158361.1.S1_at	At1g11850	-	-	1e+0	At3g47510	unknown protein	O.I.	H.G.	S.X.
0.81	96.1	PtpAffx.221103.1.S1_at	At1g11850	-	-	7e-5	At2g44840	ERF13 (ETHYLENE-RESPONSIVE ELEMENT BINDING FACTOR 13)	O.I.	H.G.	S.X.
0.79	95.3	PtpAffx.129941.1.S1_s_at	At1g11850	hypothetical protein	-	7e-10	At2g31180	MYB14 (MYB DOMAIN PROTEIN 14)	O.I.	H.G.	S.X.
0.78	95.1	PtpAffx.35610.1.A1_at	At1g11850	hypothetical protein	-	1e-13	At1g06180	ATMYB13 (MYB DOMAIN PROTEIN 13)	O.I.	H.G.	S.X.
0.77	94.9	PtpAffx.59348.1.S1_at	At1g11850	hypothetical protein	-	3e-1	At5g08370	AtAGAL2 (Arabidopsis thaliana ALPHA-GALACTOSIDASE 2)	O.I.	H.G.	S.X.
0.77	94.9	PtpAffx.106356.1.S1_s_at	At1g11850	AP2/ERF domain-containing transcription factor	-	9e-2	At5g19800	hydroxyproline-rich glycoprotein family protein	O.I.	H.G.	S.X.
0.76	94.3	PtpAffx.204806.1.S1_at	At1g11850	hypothetical protein	-	2e-2	At5g12340	unknown protein	O.I.	H.G.	S.X.
0.70	91.7	Ptp.7458.1.S1_at	At1g11850	-	-	5e-9	At4g27280	calcium-binding EF hand family protein	O.I.	H.G.	S.X.
0.70	91.7	Ptp.3396.1.S1_at	At1g11850	hypothetical protein	-	1e-5	At3g50310	MAPKKK20	O.I.	H.G.	S.X.
0.68	91.3	Ptp.3396.1.S1_s_at	At1g11850	hypothetical protein	-	1e-5	At3g50310	MAPKKK20	O.I.	H.G.	S.X.
0.68	91.3	Ptp.4398.2.A1_at	At1g11850	hypothetical protein	-	8e-4	At1g14860	atnudt18 (Arabidopsis thaliana Nudix hydrolase homolog 18)	O.I.	H.G.	S.X.
0.66	88.7	Ptp.4210.1.S1_at	At1g11850	-	-	6e-2	At5g35120	unknown protein	O.I.	H.G.	S.X.
0.60	86.0	PtpAffx.119343.1.A1_a_at	At1g11850	hypothetical protein	-	4e-10	At5g12010	unknown protein	O.I.	H.G.	S.X.
0.56	83.9	PtpAffx.142991.1.S1_at	At1g11850	hypothetical protein	-	1e+0	At5g40120	AGL76 (AGAMOUS-LIKE 76)	O.I.	H.G.	S.X.
0.56	83.9	PtpAffx.201811.1.S1_at	At1g11850	hypothetical protein	-	2e-7	At5g64660	U-box domain-containing protein	O.I.	H.G.	S.X.
0.48	75.4	PtpAffx.223981.1.S1_s_at	At1g11850	hypothetical protein	-	2e-1	At3g30845	unknown protein	O.I.	H.G.	S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage

Gene ID	HB18P10r_at
Gene name
Homology with Arabidopsis	Similar to At1g11850: unknown protein (HF=3e+0)
Module size	6 genes
NF	0.16
%ile	19.7

Co-expression analysis

Gene ID HB18P10r_at Gene name Homology with ArabidopsisSimilar to At1g11850: unknown protein (HF=3e+0) Module size 6 genes NF 0.16 %ile 19.7

Co-expressed genes

Click More genes

Specific experiments for the module

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaGlycine_maxOryza_sativaTriticum_aestivumVitis_viniferaZea_mays

Gene ID HB18P10r_at

Gene name
Homology with Arabidopsis Similar to At1g11850: unknown protein (HF=3e+0)

Module size 6 genes

NF 0.16

%ile 19.7

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays